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INSTALL report for DEDS on tokay1

This page was generated on 2020-04-15 12:17:06 -0400 (Wed, 15 Apr 2020).

Package 422/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEDS 1.60.0
Yuanyuan Xiao
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/DEDS
Branch: RELEASE_3_10
Last Commit: 781d892
Last Changed Date: 2019-10-29 13:07:31 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DEDS
Version: 1.60.0
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/DEDS_1.60.0.tar.gz && rm -rf DEDS.buildbin-libdir && mkdir DEDS.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEDS.buildbin-libdir DEDS_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL DEDS_1.60.0.zip && rm DEDS_1.60.0.tar.gz DEDS_1.60.0.zip
StartedAt: 2020-04-14 18:29:08 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 18:30:07 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 59.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/DEDS_1.60.0.tar.gz && rm -rf DEDS.buildbin-libdir && mkdir DEDS.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DEDS.buildbin-libdir DEDS_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL DEDS_1.60.0.zip && rm DEDS_1.60.0.tar.gz DEDS_1.60.0.zip
###
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100 3077k  100 3077k    0     0  5097k      0 --:--:-- --:--:-- --:--:-- 5190k

install for i386

* installing *source* package 'DEDS' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c deds.c -o deds.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c distance.c -o distance.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c input.c -o input.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c manip.c -o manip.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c random.c -o random.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c sampling.c -o sampling.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c stat_fun.c -o stat_fun.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DEDS.dll tmp.def deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DEDS.buildbin-libdir/00LOCK-DEDS/00new/DEDS/libs/i386
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DEDS'
    finding HTML links ... done
    ApoA1                                   html  
    DEDS-internal                           html  
    affySpikeIn                             html  
    aggregateFun                            html  
    comp.B                                  html  
    comp.F                                  html  
    comp.FC                                 html  
    comp.SAM                                html  
    comp.adjp                               html  
    comp.ebayes                             html  
    comp.fdr                                html  
    comp.modF                               html  
    comp.modt                               html  
    comp.stat                               html  
    comp.t                                  html  
    comp.unadjp                             html  
    deds.chooseTest                         html  
    deds.class                              html  
    deds.genExtra                           html  
    deds.pval                               html  
    deds.stat                               html  
    deds.stat.linkC                         html  
    hist.DEDS                               html  
    pairs.DEDS                              html  
    qqnorm.DEDS                             html  
    topgenes                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DEDS' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c deds.c -o deds.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c distance.c -o distance.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c input.c -o input.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c manip.c -o manip.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c random.c -o random.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c sampling.c -o sampling.o
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c stat_fun.c -o stat_fun.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DEDS.dll tmp.def deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/DEDS.buildbin-libdir/DEDS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DEDS' as DEDS_1.60.0.zip
* DONE (DEDS)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'DEDS' successfully unpacked and MD5 sums checked