Back to the "Multiple platform build/check report"

BioC experimental data: CHECK report for waveTilingData on petty

This page was generated on 2015-10-07 16:21:44 -0700 (Wed, 07 Oct 2015).

Package 232/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
waveTilingData 1.4.0
Kristof De Beuf
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/waveTilingData
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK [ OK ] OK 

Summary

Package: waveTilingData
Version: 1.4.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings waveTilingData_1.4.0.tar.gz
StartedAt: 2015-10-07 10:01:33 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 10:04:50 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 196.9 seconds
RetCode: 0
Status:  OK 
CheckDir: waveTilingData.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings waveTilingData_1.4.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/waveTilingData.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘waveTilingData/DESCRIPTION’ ... OK
* this is package ‘waveTilingData’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘waveTilingData’ can be installed ... [2s/8s] OK
* checking installed package size ... NOTE
  installed size is 240.8Mb
  sub-directories of 1Mb or more:
    data  240.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'waveTiling'
  Calls: <Anonymous> ... .findInheritedMethods -> getClass -> getClassDef -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [75s/75s] OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
leafdev                  35.146  1.349  36.520
leafdevBQ                23.825  1.127  24.953
leafdevMapAndFilterTAIR9 10.540  0.165  10.771
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.1-data-experiment/meat/waveTilingData.Rcheck/00check.log’
for details.


waveTilingData.Rcheck/00install.out:

* installing *source* package ‘waveTilingData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (waveTilingData)

waveTilingData.Rcheck/waveTilingData-Ex.timings:

nameusersystemelapsed
leafdev35.146 1.34936.520
leafdevBQ23.825 1.12724.953
leafdevFit1.0140.0751.090
leafdevInfCompare0.9590.0841.043
leafdevMapAndFilterTAIR910.540 0.16510.771