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BioC experimental data: CHECK report for LungCancerLines on moscato2

This page was generated on 2015-10-07 16:21:18 -0700 (Wed, 07 Oct 2015).

Package 144/241HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
LungCancerLines 0.6.0
Cory Barr
Snapshot Date: 2015-10-07 07:15:35 -0700 (Wed, 07 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/LungCancerLines
Last Changed Rev: 3279 / Revision: 3442
Last Changed Date: 2015-04-16 13:16:53 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: LungCancerLines
Version: 0.6.0
Command: rm -rf LungCancerLines.buildbin-libdir LungCancerLines.Rcheck && mkdir LungCancerLines.buildbin-libdir LungCancerLines.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LungCancerLines.buildbin-libdir LungCancerLines_0.6.0.tar.gz >LungCancerLines.Rcheck\00install.out 2>&1 && cp LungCancerLines.Rcheck\00install.out LungCancerLines-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=LungCancerLines.buildbin-libdir --install="check:LungCancerLines-install.out" --force-multiarch --no-vignettes --timings LungCancerLines_0.6.0.tar.gz
StartedAt: 2015-10-07 11:13:56 -0700 (Wed, 07 Oct 2015)
EndedAt: 2015-10-07 11:16:55 -0700 (Wed, 07 Oct 2015)
EllapsedTime: 179.1 seconds
RetCode: 0
Status:  OK  
CheckDir: LungCancerLines.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   rm -rf LungCancerLines.buildbin-libdir LungCancerLines.Rcheck && mkdir LungCancerLines.buildbin-libdir LungCancerLines.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LungCancerLines.buildbin-libdir LungCancerLines_0.6.0.tar.gz >LungCancerLines.Rcheck\00install.out 2>&1 && cp LungCancerLines.Rcheck\00install.out LungCancerLines-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=LungCancerLines.buildbin-libdir --install="check:LungCancerLines-install.out" --force-multiarch --no-vignettes --timings LungCancerLines_0.6.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-3.1-data-experiment/meat/LungCancerLines.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LungCancerLines/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LungCancerLines' version '0.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'LungCancerLines' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: 'gmapR'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [5s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.1-data-experiment/meat/LungCancerLines.Rcheck/00check.log'
for details.


LungCancerLines.Rcheck/00install.out:


install for i386

* installing *source* package 'LungCancerLines' ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'

install for x64

* installing *source* package 'LungCancerLines' ...
** testing if installed package can be loaded
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
* MD5 sums
packaged installation of 'LungCancerLines' as LungCancerLines_0.6.0.zip
* DONE (LungCancerLines)

LungCancerLines.Rcheck/examples_i386/LungCancerLines-Ex.timings:

nameusersystemelapsed
LungCancerBamFiles0.020.020.03
LungCancerFastqFiles0.000.010.01
TP53Genome-package0.010.000.02

LungCancerLines.Rcheck/examples_x64/LungCancerLines-Ex.timings:

nameusersystemelapsed
LungCancerBamFiles0.010.020.03
LungCancerFastqFiles000
TP53Genome-package0.030.000.03