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BioC 3.1: INSTALL report for qpgraph on petty

This page was generated on 2015-10-09 09:33:45 -0700 (Fri, 09 Oct 2015).

Package 764/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qpgraph 2.2.3
Robert Castelo
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/qpgraph
Last Changed Rev: 104779 / Revision: 109384
Last Changed Date: 2015-06-10 07:00:56 -0700 (Wed, 10 Jun 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: qpgraph
Version: 2.2.3
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL qpgraph
StartedAt: 2015-10-08 18:13:15 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 18:13:59 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 44.1 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL qpgraph
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library’
* installing *source* package ‘qpgraph’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin10.8.0
checking host system type... i686-apple-darwin10.8.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include   -mtune=core2 -g -O2 -Wall -Wall -pedantic -fPIC  -mtune=core2 -g -O2 -Wall  -c cliquer.c -o cliquer.o
cliquer.c: In function ‘unweighted_clique_search_single’:
cliquer.c:229: warning: implicit declaration of function ‘R_ProcessEvents’
cliquer.c: In function ‘clique_print_time’:
cliquer.c:1802: warning: unused variable ‘fp’
cliquer.c: In function ‘clique_print_time_always’:
cliquer.c:1851: warning: unused variable ‘fp’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include   -mtune=core2 -g -O2 -Wall -Wall -pedantic -fPIC  -mtune=core2 -g -O2 -Wall  -c graph.c -o graph.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include   -mtune=core2 -g -O2 -Wall -Wall -pedantic -fPIC  -mtune=core2 -g -O2 -Wall  -c qpgraph.c -o qpgraph.o
qpgraph.c: In function ‘stat_mis’:
qpgraph.c:4247: warning: unused variable ‘k’
qpgraph.c:4247: warning: unused variable ‘j’
qpgraph.c:4247: warning: unused variable ‘i’
qpgraph.c: In function ‘lr_em’:
qpgraph.c:4289: warning: unused variable ‘Y_j’
qpgraph.c: In function ‘ssd_A’:
qpgraph.c:8012: warning: unused variable ‘m’
qpgraph.c:8012: warning: unused variable ‘k’
qpgraph.c: In function ‘qp_fast_rnd_graph’:
qpgraph.c:8141: warning: assignment from incompatible pointer type
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include   -mtune=core2 -g -O2 -Wall -Wall -pedantic -fPIC  -mtune=core2 -g -O2 -Wall  -c reorder.c -o reorder.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.2/Resources/library/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’
Creating a generic function from function ‘rmvnorm’ in package ‘qpgraph’
Creating a generic function from function ‘sim.cross’ in package ‘qpgraph’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘eQTLnetworks.Rnw’ 
   ‘qpTxRegNet.Rnw’ 
   ‘qpgraphSimulate.Rnw’ 
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (qpgraph)