phenoDist 1.16.0
Xian Zhang
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/phenoDist | | Last Changed Rev: 102591 / Revision: 109384 | | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | ERROR | skipped | | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | ERROR | skipped | skipped | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | [ ERROR ] | skipped | skipped | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | ERROR | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phenoDist
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* checking for file ‘phenoDist/DESCRIPTION’ ... OK
* preparing ‘phenoDist’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: EBImage
Attaching package: ‘EBImage’
The following object is masked _by_ ‘.GlobalEnv’:
display
Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from ‘package:stats’:
xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, as.vector, cbind, colnames,
do.call, duplicated, eval, evalq, Filter, Find, get, intersect,
is.unsorted, lapply, Map, mapply, match, mget, order, paste, pmax,
pmax.int, pmin, pmin.int, Position, rank, rbind, Reduce, rep.int,
rownames, sapply, setdiff, sort, table, tapply, union, unique,
unlist, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: ‘Biobase’
The following object is masked from ‘package:EBImage’:
channel
Loading required package: genefilter
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
Attaching package: ‘genefilter’
The following object is masked from ‘package:base’:
anyNA
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
locfit 1.5-9.1 2013-03-22
Loading required package: grid
trying URL 'http://www.ebi.ac.uk/˜gpau/imageHTS/screens/kimorph/conf/imageconf.txt'
Warning in fileHTS(x, type = type, ..., access = access) :
cannot download the file pointed by "http://www.ebi.ac.uk/˜gpau/imageHTS/screens/kimorph/conf/imageconf.txt" to the location "/private/tmp/RtmpXHGUIN/kimorph/conf/imageconf.txt"
Error: processing vignette 'phenoDist.Rnw' failed with diagnostics:
chunk 3 (label = imageHTSSetup)
Error in readHTS(x, type = "file", filename = filename, access = access, :
cannot find filename=/private/tmp/RtmpXHGUIN/kimorph/conf/imageconf.txt
Execution halted