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BioC 3.1: CHECK report for flowPlots on moscato2

This page was generated on 2015-10-09 09:29:09 -0700 (Fri, 09 Oct 2015).

Package 341/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPlots 1.16.0
N. Hawkins
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/flowPlots
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowPlots
Version: 1.16.0
Command: rm -rf flowPlots.buildbin-libdir flowPlots.Rcheck && mkdir flowPlots.buildbin-libdir flowPlots.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowPlots.buildbin-libdir flowPlots_1.16.0.tar.gz >flowPlots.Rcheck\00install.out 2>&1 && cp flowPlots.Rcheck\00install.out flowPlots-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=flowPlots.buildbin-libdir --install="check:flowPlots-install.out" --force-multiarch --no-vignettes --timings flowPlots_1.16.0.tar.gz
StartedAt: 2015-10-09 01:48:32 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 01:49:33 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 60.5 seconds
RetCode: 0
Status:  OK  
CheckDir: flowPlots.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf flowPlots.buildbin-libdir flowPlots.Rcheck && mkdir flowPlots.buildbin-libdir flowPlots.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowPlots.buildbin-libdir flowPlots_1.16.0.tar.gz >flowPlots.Rcheck\00install.out 2>&1 && cp flowPlots.Rcheck\00install.out flowPlots-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=flowPlots.buildbin-libdir --install="check:flowPlots-install.out" --force-multiarch --no-vignettes --timings flowPlots_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/flowPlots.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowPlots/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowPlots' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'flowPlots' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
StackedData-class 5.35      0    5.35
** running examples for arch 'x64' ... [13s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
StackedData-class  6.1      0     6.1
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.1-bioc/meat/flowPlots.Rcheck/00check.log'
for details.


flowPlots.Rcheck/00install.out:


install for i386

* installing *source* package 'flowPlots' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'flowPlots' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowPlots' as flowPlots_1.16.0.zip
* DONE (flowPlots)

flowPlots.Rcheck/examples_i386/flowPlots-Ex.timings:

nameusersystemelapsed
GroupListBoxplot0.110.020.12
StackedData-class5.350.005.35
adultsNeonates000
computeMarginalData-methods1.30.01.3
computeMarkers-methods000
computePFDData-methods1.150.001.15
computePFDGroupStatsList0.200.030.49
computePFDPartsData-methods1.420.001.42
computeProfileData-methods1.370.001.37
legendPFDStatsGroupNames0.060.000.06
makeBarplotData0.020.000.02
makeDataList0.030.000.03
makeTernaryData0.080.000.08
marginalDF000
marginalData-methods000
markerMatrix000
markers-methods0.010.000.01
pfdDF000
pfdData-methods000
pfdPartsData-methods000
pfdPartsList0.000.010.02
profileDF000
profileData-methods000
readStackedData-methods0.060.000.06
stackedData-methods0.080.000.08

flowPlots.Rcheck/examples_x64/flowPlots-Ex.timings:

nameusersystemelapsed
GroupListBoxplot0.140.000.14
StackedData-class6.10.06.1
adultsNeonates000
computeMarginalData-methods1.470.001.49
computeMarkers-methods000
computePFDData-methods1.310.001.31
computePFDGroupStatsList0.250.000.34
computePFDPartsData-methods1.760.001.76
computeProfileData-methods1.580.001.58
legendPFDStatsGroupNames0.060.000.06
makeBarplotData000
makeDataList0.030.000.03
makeTernaryData0.060.020.08
marginalDF000
marginalData-methods0.010.000.02
markerMatrix000
markers-methods000
pfdDF000
pfdData-methods000
pfdPartsData-methods0.020.000.01
pfdPartsList000
profileDF000
profileData-methods000
readStackedData-methods0.050.010.06
stackedData-methods0.080.000.08