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BioC 3.1: BUILD BIN report for flowMatch on petty

This page was generated on 2015-10-09 09:36:10 -0700 (Fri, 09 Oct 2015).

Package 337/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowMatch 1.4.0
Ariful Azad
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/flowMatch
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowMatch
Version: 1.4.0
Command: rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowMatch_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowMatch.buildbin-libdir
StartedAt: 2015-10-09 03:08:04 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 03:08:42 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 38.3 seconds
RetCode: 0
Status:  OK 
PackageFile: flowMatch_1.4.0.tgz
PackageFileSize: 3.78 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowMatch_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowMatch.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowMatch.buildbin-libdir flowMatch_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package ‘flowMatch’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c BipartiteGraph.cpp -o BipartiteGraph.o
BipartiteGraph.cpp:18: warning: division by zero in ‘1.0e+0 / 0.’
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o
MinWghtEdgCoverBipartite.cpp: In function ‘void update_height(mclust&, std::vector<std::vector<templatePair, std::allocator<templatePair> >, std::allocator<std::vector<templatePair, std::allocator<templatePair> > > >, std::vector<std::vector<BipartiteGraph, std::allocator<BipartiteGraph> >, std::allocator<std::vector<BipartiteGraph, std::allocator<BipartiteGraph> > > >, double)’:
MinWghtEdgCoverBipartite.cpp:271: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c flowMatch.cpp -o flowMatch.o
flowMatch.cpp: In function ‘Rcpp::List computeMEC(Rcpp::NumericMatrix, double)’:
flowMatch.cpp:43: warning: comparison between signed and unsigned integer expressions
flowMatch.cpp:45: warning: comparison between signed and unsigned integer expressions
flowMatch.cpp:53: warning: comparison between signed and unsigned integer expressions
flowMatch.cpp:55: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o flowMatch.so BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/flowMatch.buildbin-libdir/flowMatch/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowMatch)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgcc_s.1.dylib" "flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libgfortran.2.dylib" "flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.5.2.dylib" "flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.2/Resources/lib/libreadline.dylib" "flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so"