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BioC 3.1: CHECK report for flowCore on petty

This page was generated on 2015-10-09 09:33:09 -0700 (Fri, 09 Oct 2015).

Package 331/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCore 1.34.11
M.Jiang
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/flowCore
Last Changed Rev: 109083 / Revision: 109384
Last Changed Date: 2015-10-01 11:54:22 -0700 (Thu, 01 Oct 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ] OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: flowCore
Version: 1.34.11
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings flowCore_1.34.11.tar.gz
StartedAt: 2015-10-08 22:59:21 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 23:03:47 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 265.3 seconds
RetCode: 0
Status:  OK 
CheckDir: flowCore.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings flowCore_1.34.11.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowCore/DESCRIPTION’ ... OK
* this is package ‘flowCore’ version ‘1.34.11’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... NOTE
Found the following apparent object files/libraries:
  src/boost_regex/c_regex_traits.o src/boost_regex/cpp_regex_traits.o
  src/boost_regex/cregex.o src/boost_regex/fileiter.o
  src/boost_regex/icu.o src/boost_regex/instances.o
  src/boost_regex/posix_api.o src/boost_regex/regex_debug.o
  src/boost_regex/regex_raw_buffer.o
  src/boost_regex/regex_traits_defaults.o src/boost_regex/regex.o
  src/boost_regex/static_mutex.o src/boost_regex/usinstances.o
  src/boost_regex/w32_regex_traits.o src/boost_regex/wc_regex_traits.o
  src/boost_regex/wide_posix_api.o src/boost_regex/winstances.o
Object files/libraries should not be included in a source package.
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘flowCore’ can be installed ... [88s/92s] OK
* checking installed package size ... NOTE
  installed size is 18.4Mb
  sub-directories of 1Mb or more:
    data      5.0Mb
    doc       1.3Mb
    extdata   1.1Mb
    lib       8.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘Rgraphviz’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
rbind2,flowSet-flowSet : .local: warning in assign(i, x[[i]], env =
  env): partial argument match of 'env' to 'envir'
rbind2,flowSet-flowSet : .local: warning in assign(i, y[[i]], env =
  env): partial argument match of 'env' to 'envir'
%in%,flowFrame-norm2Filter: no visible global function definition for
  ‘cov.rob’
spillover,flowSet : .local : <anonymous>: no visible global function
  definition for ‘rangeGate’
split,flowFrame-factor : .local: no visible binding for global variable
  ‘i’
summary,workFlow : .local: no visible binding for global variable ‘wf’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [43s/44s] OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
biexponentialTransform 5.151  0.161   5.316
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘run-all.R’ [10s/10s]
 [10s/10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 5 NOTEs
See
  ‘/Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/00check.log’
for details.


flowCore.Rcheck/00install.out:

* installing *source* package ‘flowCore’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c FastLogicle.cpp -o FastLogicle.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c Hyperlog.cpp -o Hyperlog.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c Logicle.cpp -o Logicle.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c RcppExports.cpp -o RcppExports.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c biexponential.c -o biexponential.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c fcsTextParse.cpp -o fcsTextParse.o
fcsTextParse.cpp:44:80: warning: multi-line comment
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c hyperlogTransform.cpp -o hyperlogTransform.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c inPolygon.c -o inPolygon.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c inPolytope.c -o inPolytope.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c init.c -o init.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c logicleTransform.cpp -o logicleTransform.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c pairVectorRcppWrap.cpp -o pairVectorRcppWrap.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c uint2double.cpp -o uint2double.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c zeroin.c -o zeroin.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/cregex.cpp -o boost_regex/cregex.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/icu.cpp -o boost_regex/icu.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/instances.cpp -o boost_regex/instances.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/regex.cpp -o boost_regex/regex.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.2/Resources/library/BH/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c boost_regex/winstances.cpp -o boost_regex/winstances.o
mkdir -p "/Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/flowCore/lib"
ar rs "/Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
ar: creating archive /Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a
/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a(icu.o) has no symbols
/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a(regex_debug.o) has no symbols
/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a(usinstances.o) has no symbols
/usr/bin/ranlib: file: /Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a(w32_regex_traits.o) has no symbols
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o flowCore.so FastLogicle.o Hyperlog.o Logicle.o RcppExports.o biexponential.o fcsTextParse.o hyperlogTransform.o inPolygon.o inPolytope.o init.o logicleTransform.o pairVectorRcppWrap.o uint2double.o zeroin.o /Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/flowCore/lib/libboost_regex.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.1-bioc/meat/flowCore.Rcheck/flowCore/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowCore)

flowCore.Rcheck/flowCore-Ex.timings:

nameusersystemelapsed
EHtrans-class0.0610.0040.065
FCSTransTransform1.5030.1081.611
Subset-methods0.5270.0300.557
actionItem-class0.0030.0000.003
arcsinhTransform0.0610.0010.062
asinht-class0.0430.0050.047
asinhtGml2-class0.0910.0010.092
biexponentialTransform5.1510.1615.316
boundaryFilter-class0.1500.0130.164
characterOrTransformation-class0.0030.0000.003
coerce0.2520.0310.282
compensateActionItem-class0.0030.0010.003
compensateView-class0.0020.0000.003
compensatedParameter-class0.2150.0170.232
compensation-class0.5080.1030.611
dg1polynomial-class0.0460.0050.051
each_col-methods0.0610.0110.072
ellipsoidGate0.1150.0080.123
exponential-class0.0600.0190.079
expressionFilter-class0.1080.0040.112
fcReference-class0.0030.0010.003
filter-methods1.1690.1101.279
filter-on-methods0.1660.0010.168
filterList-class0.0150.0000.015
filterResult-class0.0030.0010.003
filterResultList-class0.0030.0010.003
filterSummary-class0.0030.0010.003
filterSummaryList-class0.0020.0000.002
flowFrame-class4.6460.2324.968
flowSet-class3.5690.1783.754
fsApply0.1850.0130.197
gateActionItem-class0.0020.0000.001
gateView-class0.0010.0010.001
getIndexSort-methods0.0420.0010.043
hyperlog-class3.0700.0143.085
hyperlogtGml2-class0.0650.0020.066
identifier-methods0.0340.0030.038
inverseLogicleTransform0.8190.0910.910
invsplitscale-class0.0450.0000.046
keyword-methods1.0290.1141.145
kmeansFilter0.2500.0190.269
linearTransform0.0610.0010.062
lintGml2-class0.0890.0030.091
lnTransform1.6370.1311.773
logTransform0.0660.0040.070
logarithm-class0.0540.0030.057
logicalFilterResult-class0.0020.0000.002
logicleTransform1.3010.1271.432
logicletGml2-class0.1040.0040.107
logtGml2-class0.0700.0030.073
manyFilterResult-class0.0030.0000.002
multipleFilterResult-class0.0010.0000.001
norm2Filter-class0.2150.0040.219
normalizeActionItem-class0.0020.0000.001
normalizeView-class0.0020.0010.003
parameters-methods0.0340.0020.037
polygonGate0.1070.0130.120
quadGate0.2530.0040.257
quadratic-class0.0360.0020.038
quadraticTransform0.0530.0040.058
ratio-class0.0470.0040.050
ratiotGml2-class0.0980.0060.105
read.FCS0.0880.0020.090
read.FCSheader0.0100.0030.291
read.flowSet0.1700.0060.176
rectangleGate0.1580.0060.165
sampleFilter-class0.0740.0020.075
scaleTransform0.0470.0030.050
singleParameterTransform-class0.0020.0000.002
sinht-class0.0330.0000.034
split-methods1.4900.1291.619
splitScaleTransform1.8000.1351.934
splitscale-class0.0490.0040.054
squareroot-class0.0450.0040.048
subsettingActionItem-class0.0020.0000.003
subsettingView-class0.0020.0000.003
timeFilter-class2.3190.1372.456
transform-class0.0030.0000.004
transformActionItem-class0.0020.0000.003
transformFilter-class0.2090.0150.225
transformList-class0.9220.1021.025
transformMap-class0.0020.0000.002
transformView-class0.0030.0000.003
truncateTransform0.0600.0050.065
unitytransform-class0.0440.0040.048
view-class0.0020.0000.003
workFlow-class0.0040.0000.004
write.FCS0.1160.0220.138
write.flowSet1.2960.1221.419