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BioC 3.1: CHECK report for erccdashboard on moscato2

This page was generated on 2015-10-09 09:31:29 -0700 (Fri, 09 Oct 2015).

Package 305/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
erccdashboard 1.2.1
Sarah Munro
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/erccdashboard
Last Changed Rev: 106593 / Revision: 109384
Last Changed Date: 2015-07-20 19:19:03 -0700 (Mon, 20 Jul 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: erccdashboard
Version: 1.2.1
Command: rm -rf erccdashboard.buildbin-libdir erccdashboard.Rcheck && mkdir erccdashboard.buildbin-libdir erccdashboard.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=erccdashboard.buildbin-libdir erccdashboard_1.2.1.tar.gz >erccdashboard.Rcheck\00install.out 2>&1 && cp erccdashboard.Rcheck\00install.out erccdashboard-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=erccdashboard.buildbin-libdir --install="check:erccdashboard-install.out" --force-multiarch --no-vignettes --timings erccdashboard_1.2.1.tar.gz
StartedAt: 2015-10-09 01:32:22 -0700 (Fri, 09 Oct 2015)
EndedAt: 2015-10-09 01:34:58 -0700 (Fri, 09 Oct 2015)
EllapsedTime: 156.4 seconds
RetCode: 0
Status:  OK  
CheckDir: erccdashboard.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf erccdashboard.buildbin-libdir erccdashboard.Rcheck && mkdir erccdashboard.buildbin-libdir erccdashboard.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=erccdashboard.buildbin-libdir erccdashboard_1.2.1.tar.gz >erccdashboard.Rcheck\00install.out 2>&1 && cp erccdashboard.Rcheck\00install.out erccdashboard-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=erccdashboard.buildbin-libdir --install="check:erccdashboard-install.out" --force-multiarch --no-vignettes --timings erccdashboard_1.2.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/erccdashboard.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'erccdashboard/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'erccdashboard' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'erccdashboard' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [26s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
estLODR 10.53      0   10.53
** running examples for arch 'x64' ... [28s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
estLODR 10.47   0.03    10.5
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

erccdashboard.Rcheck/00install.out:


install for i386

* installing *source* package 'erccdashboard' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'erccdashboard' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'erccdashboard' as erccdashboard_1.2.1.zip
* DONE (erccdashboard)

erccdashboard.Rcheck/examples_i386/erccdashboard-Ex.timings:

nameusersystemelapsed
ERCC000
SEQC.Example0.010.000.02
annotLODR2.190.012.20
dynRangePlot1.450.001.45
erccROC2.040.002.04
estLODR10.53 0.0010.53
est_r_m1.20.01.2
geneExprTest1.560.001.56
initDat0.190.000.19
maSignal4.100.024.12
runDashboard000
saveERCCPlots000

erccdashboard.Rcheck/examples_x64/erccdashboard-Ex.timings:

nameusersystemelapsed
ERCC0.010.000.02
SEQC.Example000
annotLODR2.360.052.46
dynRangePlot2.150.002.16
erccROC3.060.003.05
estLODR10.47 0.0310.50
est_r_m1.360.001.36
geneExprTest1.400.021.42
initDat0.250.000.25
maSignal3.740.003.74
runDashboard000
saveERCCPlots0.020.000.02