BioC 3.1: CHECK report for UNDO on moscato2

Package: UNDO

Version: 1.10.0

Command: rm -rf UNDO.buildbin-libdir UNDO.Rcheck && mkdir UNDO.buildbin-libdir UNDO.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=UNDO.buildbin-libdir UNDO_1.10.0.tar.gz >UNDO.Rcheck\00install.out 2>&1 && cp UNDO.Rcheck\00install.out UNDO-install.out && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=UNDO.buildbin-libdir --install="check:UNDO-install.out" --force-multiarch --no-vignettes --timings UNDO_1.10.0.tar.gz

StartedAt: 2015-10-09 07:02:17 -0700 (Fri, 09 Oct 2015)

EndedAt: 2015-10-09 07:03:13 -0700 (Fri, 09 Oct 2015)

EllapsedTime: 55.7 seconds

RetCode: 0

Status:  OK

CheckDir: UNDO.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf UNDO.buildbin-libdir UNDO.Rcheck && mkdir UNDO.buildbin-libdir UNDO.Rcheck && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=UNDO.buildbin-libdir UNDO_1.10.0.tar.gz >UNDO.Rcheck\00install.out 2>&1 && cp UNDO.Rcheck\00install.out UNDO-install.out  && E:\biocbld\bbs-3.1-bioc\R\bin\R.exe CMD check --library=UNDO.buildbin-libdir --install="check:UNDO-install.out" --force-multiarch --no-vignettes --timings UNDO_1.10.0.tar.gz
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* using log directory 'E:/biocbld/bbs-3.1-bioc/meat/UNDO.Rcheck'
* using R version 3.2.2 (2015-08-14)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'UNDO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'UNDO' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'UNDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [6s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'UNDO' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'UNDO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'UNDO' as UNDO_1.10.0.zip
* DONE (UNDO)

name	user	system	elapsed
BiologicalMixMCF7HS27	0.11	0.00	0.10
NumericalMixMCF7HS27	0.14	0.00	0.15
NumericalMixingMatrix	0.01	0.00	0.01
PureMCF7HS27	0.08	0.00	0.08
UNDO-package	1.52	0.00	1.51
calc_E1	0	0	0
dimension_reduction	0	0	0
gene_expression_input	0	0	0
marker_gene_selection	0.07	0.00	0.08
mixing_matrix_computation	0.53	0.00	0.53
two_source_deconv	1.53	0.00	1.53

name	user	system	elapsed
BiologicalMixMCF7HS27	0.09	0.02	0.11
NumericalMixMCF7HS27	0.14	0.00	0.14
NumericalMixingMatrix	0	0	0
PureMCF7HS27	0.14	0.00	0.14
UNDO-package	1.71	0.00	1.75
calc_E1	0	0	0
dimension_reduction	0	0	0
gene_expression_input	0.02	0.00	0.01
marker_gene_selection	0.12	0.00	0.13
mixing_matrix_computation	0.61	0.00	0.64
two_source_deconv	2.00	0.00	1.99