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BioC 3.1: INSTALL report for PICS on petty

This page was generated on 2015-10-09 09:34:08 -0700 (Fri, 09 Oct 2015).

Package 720/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PICS 2.12.0
Renan Sauteraud
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/PICS
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: PICS
Version: 2.12.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PICS
StartedAt: 2015-10-08 18:11:10 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 18:11:32 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 21.2 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PICS
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library’
* installing *source* package ‘PICS’ ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c pics.c -o pics.o
pics.c: In function ‘iterEM’:
pics.c:581: warning: unused variable ‘mu’
pics.c: In function ‘ECM1’:
pics.c:803: warning: suggest parentheses around comparison in operand of &
pics.c:963: warning: suggest parentheses around comparison in operand of &
pics.c:651: warning: unused variable ‘k’
pics.c: In function ‘ECM2’:
pics.c:1009: warning: unused variable ‘ee’
pics.c:1009: warning: unused variable ‘ggR’
pics.c:1009: warning: unused variable ‘ggF’
pics.c:1009: warning: unused variable ‘aaR’
pics.c:1009: warning: unused variable ‘aaF’
pics.c:1009: warning: unused variable ‘etaDiff’
pics.c:1000: warning: unused variable ‘k’
pics.c: In function ‘BIC’:
pics.c:1272: warning: unused variable ‘k’
pics.c: In function ‘getInfMat’:
pics.c:1633: warning: unused variable ‘PhiRw’
pics.c:1633: warning: unused variable ‘PhiFw’
pics.c: In function ‘mergePeak’:
pics.c:1889: warning: unused variable ‘j’
pics.c:1889: warning: unused variable ‘i’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c segment.c -o segment.o
segment.c: In function ‘segReads’:
segment.c:123: warning: suggest parentheses around comparison in operand of &
segment.c:114: warning: unused variable ‘count’
segment.c: In function ‘callRegions’:
segment.c:308: warning: unused variable ‘i’
segment.c: In function ‘getSegL’:
segment.c:1364: warning: unused variable ‘j’
segment.c: In function ‘getDensity’:
segment.c:1543: warning: suggest parentheses around comparison in operand of &
segment.c:1544: warning: suggest parentheses around comparison in operand of &
segment.c:1545: warning: suggest parentheses around comparison in operand of &
segment.c:1546: warning: suggest parentheses around comparison in operand of &
segment.c:1547: warning: suggest parentheses around comparison in operand of &
segment.c:1548: warning: suggest parentheses around comparison in operand of &
segment.c:1549: warning: suggest parentheses around comparison in operand of &
segment.c:1490: warning: unused variable ‘filter1’
segment.c:1489: warning: unused variable ‘muFilter’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -L/usr/local/lib -o PICS.so pics.o segment.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.2/Resources/library/PICS/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
* DONE (PICS)