IdMappingRetrieval 1.16.0
Alex Lisovich , Roger Day
| Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/IdMappingRetrieval | | Last Changed Rev: 102591 / Revision: 109384 | | Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | [ ERROR ] | skipped | | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | ERROR | skipped | skipped | |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | ERROR | skipped | skipped | |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | ERROR | skipped | skipped | |
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### Running command:
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### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data IdMappingRetrieval
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* checking for file ‘IdMappingRetrieval/DESCRIPTION’ ... OK
* preparing ‘IdMappingRetrieval’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: R.oo
Loading required package: R.methodsS3
R.methodsS3 v1.7.0 (2015-02-19) successfully loaded. See ?R.methodsS3 for help.
R.oo v1.19.0 (2015-02-27) successfully loaded. See ?R.oo for help.
Attaching package: ‘R.oo’
The following objects are masked from ‘package:methods’:
getClasses, getMethods
The following objects are masked from ‘package:base’:
attach, detach, gc, load, save
Loading required package: XML
Loading required package: RCurl
Loading required package: bitops
Attaching package: ‘RCurl’
The following object is masked from ‘package:R.oo’:
clone
Loading required package: rChoiceDialogs
Loading required package: rJava
Attaching package: ‘rJava’
The following object is masked from ‘package:RCurl’:
clone
The following object is masked from ‘package:R.oo’:
clone
This is rChoiceDialogs 1.0.6 2014-09-05
Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
This is IdMappingRetrieval 1.16.0 2015-04-09
trying URL 'http://media.affymetrix.com/analysis/downloads/na35/ivt/HG-U133_Plus_2.na35.annot.csv.zip'
Content type 'application/zip' length 34607271 bytes (33.0 MB)
==================================================
downloaded 33.0 MB
* Hostname was NOT found in DNS cache
* Trying 129.43.40.120...
* Connected to david.ncifcrf.gov (129.43.40.120) port 443 (#2)
* successfully set certificate verify locations:
* CAfile: none
CApath: /etc/ssl/certs
* SSL connection using ECDHE-RSA-AES256-GCM-SHA384
* Server certificate:
* subject: OU=Domain Control Validated; CN=*.ncifcrf.gov
* start date: 2015-04-23 21:21:46 GMT
* expire date: 2018-05-05 01:09:59 GMT
* subjectAltName: david.ncifcrf.gov matched
* issuer: C=US; ST=Arizona; L=Scottsdale; O=GoDaddy.com, Inc.; OU=http://certs.godaddy.com/repository/; CN=Go Daddy Secure Certificate Authority - G2
* SSL certificate verify result: unable to get local issuer certificate (20), continuing anyway.
> GET //conversion.jsp HTTP/1.1
Host: david.ncifcrf.gov
Accept: */*
< HTTP/1.1 200 OK
< Date: Fri, 09 Oct 2015 02:39:20 GMT
* Server Apache-Coyote/1.1 is not blacklisted
< Server: Apache-Coyote/1.1
< Content-Type: text/html;charset=utf-8
< Set-Cookie: JSESSIONID=7CDA833332178121825A6DB8FEC6B003; Path=/; HttpOnly
< Vary: Accept-Encoding
< Transfer-Encoding: chunked
<
* Connection #2 to host david.ncifcrf.gov left intact
Error: processing vignette 'IdMappingRetrieval.Rnw' failed with diagnostics:
chunk 3 (label = chunk3a)
Error in function (type, msg, asError = TRUE) :
SSL certificate problem: unable to get local issuer certificate
Execution halted