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BioC 3.1: INSTALL report for DNAcopy on zin2

This page was generated on 2015-10-09 09:22:50 -0700 (Fri, 09 Oct 2015).

Package 269/1024HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DNAcopy 1.42.0
Venkatraman E. Seshan
Snapshot Date: 2015-10-08 17:20:21 -0700 (Thu, 08 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/DNAcopy
Last Changed Rev: 102591 / Revision: 109384
Last Changed Date: 2015-04-16 12:42:01 -0700 (Thu, 16 Apr 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64 [ OK ] OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: DNAcopy
Version: 1.42.0
Command: /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD INSTALL DNAcopy
StartedAt: 2015-10-08 18:00:37 -0700 (Thu, 08 Oct 2015)
EndedAt: 2015-10-08 18:00:41 -0700 (Thu, 08 Oct 2015)
EllapsedTime: 3.4 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD INSTALL DNAcopy
###
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* installing to library ‘/home/biocbuild/bbs-3.1-bioc/R/library’
* installing *source* package ‘DNAcopy’ ...
** libs
gfortran   -fpic  -g -O2  -Wall -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f: In function ‘wtmaxo’:
cbsWtstats.f:283:0: warning: ‘tmaxj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       iseg(2) = tmaxj
 ^
cbsWtstats.f:282:0: warning: ‘tmaxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       iseg(1) = tmaxi
 ^
gfortran   -fpic  -g -O2  -Wall -c cbststats.f -o cbststats.o
cbststats.f: In function ‘tmaxo’:
cbststats.f:258:0: warning: ‘sxmxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                      tmaxj = sxmxi + i2j
 ^
gfortran   -fpic  -g -O2  -Wall -c changepoints-wtd.f -o changepoints-wtd.o
gfortran   -fpic  -g -O2  -Wall -c changepoints.f -o changepoints.o
gfortran   -fpic  -g -O2  -Wall -c esegment.f -o esegment.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c flchoose.c -o flchoose.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c fphyper.c -o fphyper.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c fpnorm.c -o fpnorm.o
gfortran   -fpic  -g -O2  -Wall -c getbdry.f -o getbdry.o
gfortran   -fpic  -g -O2  -Wall -c prune.f -o prune.o
gcc -std=gnu99 -I/home/biocbuild/bbs-3.1-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c rshared.c -o rshared.o
gfortran   -fpic  -g -O2  -Wall -c segmentp.f -o segmentp.o
gfortran   -fpic  -g -O2  -Wall -c smoothCNA.f -o smoothCNA.o
gfortran   -fpic  -g -O2  -Wall -c tailprobs.f -o tailprobs.o
gcc -std=gnu99 -shared -L/home/biocbuild/bbs-3.1-bioc/R/lib -L/usr/local/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.1-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.1-bioc/R/library/DNAcopy/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DNAcopy)