ncdfFlow 2.12.0
Mike Jiang
| Snapshot Date: 2015-04-09 16:20:12 -0700 (Thu, 09 Apr 2015) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_0/madman/Rpacks/ncdfFlow | | Last Changed Rev: 95439 / Revision: 102249 | | Last Changed Date: 2014-10-13 14:38:33 -0700 (Mon, 13 Oct 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | OK | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.0/bioc/src/contrib/ncdfFlow_2.12.0.tar.gz && D:\biocbld\bbs-3.0-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch ncdfFlow_2.12.0.tar.gz && rm ncdfFlow_2.12.0.tar.gz
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3003k 100 3003k 0 0 81.3M 0 --:--:-- --:--:-- --:--:-- 104M
install for i386
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'ncdfFlow' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
cp includeWin/i386/* includeWin/
cp libwin/i386/*.dll .
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c bitOps.cpp -o bitOps.o
bitOps.cpp: In function 'Rcpp::LogicalVector toLogical(Rcpp::RawVector)':
bitOps.cpp:23:11: warning: unused variable 'nByte' [-Wunused-variable]
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O3 -Wall -std=gnu99 -mtune=core2 -c hdfFlow.c -o hdfFlow.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c readFrame.cpp -o readFrame.o
readFrame.cpp: In function 'Rcpp::NumericVector readSlice_cpp(std::string, std::vector<unsigned int, std::allocator<unsigned int> >, unsigned int, unsigned int&)':
readFrame.cpp:140:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
readFrame.cpp:237:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
readFrame.cpp: In function 'Rcpp::S4 readFrame(Rcpp::S4, Rcpp::RObject, Rcpp::RObject, bool)':
readFrame.cpp:373:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m32 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O3 -Wall -std=gnu99 -mtune=core2 -c wrappers.c -o wrappers.o
wrappers.c: In function 'readSlice':
wrappers.c:535:12: warning: unused variable 'data_out' [-Wunused-variable]
g++ -m32 -shared -s -static-libgcc -o ncdfFlow.dll tmp.def RcppExports.o bitOps.o hdfFlow.o init.o readFrame.o wrappers.o -L. -llibhdf5ForBioC-7 -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/ncdfFlow/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'lapply' from package 'base' in package 'ncdfFlow'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing to library 'D:/biocbld/bbs-3.0-bioc/R/library'
* installing *source* package 'ncdfFlow' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
cp includeWin/x64/* includeWin/
cp libwin/x64/*.dll .
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c bitOps.cpp -o bitOps.o
bitOps.cpp: In function 'Rcpp::LogicalVector toLogical(Rcpp::RawVector)':
bitOps.cpp:23:11: warning: unused variable 'nByte' [-Wunused-variable]
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O2 -Wall -std=gnu99 -mtune=core2 -c hdfFlow.c -o hdfFlow.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
g++ -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O2 -Wall -mtune=core2 -c readFrame.cpp -o readFrame.o
readFrame.cpp: In function 'Rcpp::NumericVector readSlice_cpp(std::string, std::vector<unsigned int, std::allocator<unsigned int> >, unsigned int, unsigned int&)':
readFrame.cpp:140:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
readFrame.cpp:237:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
readFrame.cpp: In function 'Rcpp::S4 readFrame(Rcpp::S4, Rcpp::RObject, Rcpp::RObject, bool)':
readFrame.cpp:373:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
gcc -m64 -I"D:/biocbld/BBS-3˜1.0-B/R/include" -DNDEBUG -I"D:/biocbld/bbs-3.0-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/RcppArmadillo/include" -I"D:/biocbld/bbs-3.0-bioc/R/library/BH/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -IincludeWin -DWINDOWS -O2 -Wall -std=gnu99 -mtune=core2 -c wrappers.c -o wrappers.o
wrappers.c: In function 'readSlice':
wrappers.c:535:12: warning: unused variable 'data_out' [-Wunused-variable]
g++ -m64 -shared -s -static-libgcc -o ncdfFlow.dll tmp.def RcppExports.o bitOps.o hdfFlow.o init.o readFrame.o wrappers.o -L. -llibhdf5ForBioC-7 -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-3˜1.0-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.0-bioc/R/library/ncdfFlow/libs/x64
** testing if installed package can be loaded
* DONE (ncdfFlow)