zlibbioc 1.0.1
Bioconductor Package Maintainer
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/zlibbioc | | Last Changed Rev: 63420 / Revision: 64395 | | Last Changed Date: 2012-03-03 12:56:55 -0800 (Sat, 03 Mar 2012) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
install for i386
* installing *source* package 'zlibbioc' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
mkdir -p "D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.9-bioc/tmpdir/RtmpohI2TI/R.INSTALL29e87bfe7d35/zlibbioc/src/zlib-1.2.5'
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
gcc -m32 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
windres --define GCC_WINDRES --target=pe-i386 -o zlibrc.o win32/zlib1.rc
gcc -m32 -shared -Wl,--out-implib,libzbiocdll.a \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o
Creating library file: libzbiocdll.a
strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.9-bioc/tmpdir/RtmpohI2TI/R.INSTALL29e87bfe7d35/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll .
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o
gcc -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'UsingZlibbioc.Rnw'
** testing if installed package can be loaded
add DLL for x64
* installing *source* package 'zlibbioc' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
mkdir -p "D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
make -C zlib-1.2.5 -fwin32/Makefile.gcc libzbioc.a zlib1bioc.dll
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.9-bioc/tmpdir/Rtmp0SOwxE/R.INSTALL337c78523326/zlibbioc/src/zlib-1.2.5'
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o adler32.o adler32.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o compress.o compress.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o crc32.o crc32.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o deflate.o deflate.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzclose.o gzclose.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzlib.o gzlib.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzread.o gzread.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o gzwrite.o gzwrite.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o infback.o infback.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inffast.o inffast.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inflate.o inflate.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o inftrees.o inftrees.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o trees.o trees.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o uncompr.o uncompr.c
gcc -m64 -O3 -Wall -DNO_VIZ -DZ_PREFIX -c -o zutil.o zutil.c
ar rcs libzbioc.a adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o
windres --define GCC_WINDRES --target=pe-x86-64 -o zlibrc.o win32/zlib1.rc
gcc -m64 -shared -Wl,--out-implib,libzbiocdll.a \
-o zlib1bioc.dll win32/zlib.def adler32.o compress.o crc32.o deflate.o gzclose.o gzlib.o gzread.o gzwrite.o infback.o inffast.o inflate.o inftrees.o trees.o uncompr.o zutil.o zlibrc.o
Creating library file: libzbiocdll.a
strip zlib1bioc.dll
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.9-bioc/tmpdir/Rtmp0SOwxE/R.INSTALL337c78523326/zlibbioc/src/zlib-1.2.5'
cp zlib-1.2.5/libzbioc.a zlib-1.2.5/zlib1bioc.dll .
cp zlib-1.2.5/zconf.h zlib-1.2.5/zlib.h "D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/include"
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c R_init_zlibbioc.c -o R_init_zlibbioc.o
gcc -m64 -shared -s -static-libgcc -o zlibbioc.dll tmp.def R_init_zlibbioc.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/zlibbioc.buildbin-libdir/zlibbioc/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'zlibbioc' as zlibbioc_1.0.1.zip
* DONE (zlibbioc)