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Package 484/514HostnameOS / ArchBUILDCHECKBUILD BIN
sva 3.0.3
Jeffrey T. Leek
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/sva
Last Changed Rev: 63722 / Revision: 64395
Last Changed Date: 2012-03-10 09:19:28 -0800 (Sat, 10 Mar 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] skipped  skipped 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: sva
Version: 3.0.3
Command: chmod a+r sva -R && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sva
StartedAt: 2012-03-24 00:03:39 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 00:04:06 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 27.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'sva/DESCRIPTION' ... OK
* preparing 'sva':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to remove the existing 'INDEX'
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: corpcor
Loading required package: mgcv
This is mgcv 1.7-13. For overview type 'help("mgcv-package")'.
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: cluster
Loading required package: survival
Loading required package: splines

Error: processing vignette 'sva.Rnw' failed with diagnostics:
 chunk 12 (label = input) 
Error in contrasts.fit(fit, contrast.matrix) : 
  Number of rows of contrast matrix must match number of coefficients
Execution halted