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Package 454/514HostnameOS / ArchBUILDCHECKBUILD BIN
siggenes 1.28.0
Holger Schwender
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/siggenes
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: siggenes
Version: 1.28.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings siggenes_1.28.0.tar.gz
StartedAt: 2012-03-24 02:43:14 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 02:44:13 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 58.6 seconds
RetCode: 0
Status:  OK 
CheckDir: siggenes.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/siggenes.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘siggenes/DESCRIPTION’ ... OK
* this is package ‘siggenes’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘siggenes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘siggenes/R/zzz.R’:
  .onLoad calls:
    require(methods)

Package startup functions should not change the search path.
See section ‘Good practice’ in ?.onAttach.

lines.denspr: no visible binding for global variable ‘xval’
lines.denspr: no visible binding for global variable ‘y’
plot.denspr: no visible binding for global variable ‘xval’
plot.denspr: no visible binding for global variable ‘y’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

siggenes.Rcheck/00install.out:

* installing *source* package ‘siggenes’ ...
** R
** inst
** preparing package for lazy loading
Creating a generic function for ‘print’ from package ‘base’ in package ‘siggenes’
Creating a generic function for ‘identify’ from package ‘graphics’ in package ‘siggenes’
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘siggenes.Rnw’ 
** testing if installed package can be loaded

* DONE (siggenes)

siggenes.Rcheck/siggenes-Ex.timings:

nameusersystemelapsed
EBAM-class000
SAM-class0.0000.0000.001
chisq.ebam000
chisq.stat0.0000.0000.001
delta.plot000
denspr000
ebam000
find.a0000
help.ebam000
help.finda0000
help.sam000
list.siggenes000
md.plot000
pi0.est000
qvalue.cal000
sam000
sam.plot2000
trend.ebam000
trend.stat0.0000.0000.001