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Package 397/514HostnameOS / ArchBUILDCHECKBUILD BIN
rama 1.28.0
Raphael Gottardo
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/rama
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: rama
Version: 1.28.0
Command: rm -rf rama.buildbin-libdir && mkdir rama.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=rama.buildbin-libdir rama_1.28.0.tar.gz
StartedAt: 2012-03-24 04:02:48 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 04:03:17 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 29.2 seconds
RetCode: 0
Status:  OK  
PackageFile: rama_1.28.0.zip
PackageFileSize: 589.8 KiB

Command output


install for i386

* installing *source* package 'rama' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function 'mcmc_shift':
estimation_slice.c:122:10: warning: unused variable 'SSeps_sd_new' [-Wunused-variable]
estimation_slice.c:121:10: warning: unused variable 'SSeps_sd' [-Wunused-variable]
estimation_slice.c:117:10: warning: unused variable 'pi' [-Wunused-variable]
estimation_slice.c:116:24: warning: unused variable 'SS12' [-Wunused-variable]
estimation_slice.c:116:17: warning: unused variable 'SSR2' [-Wunused-variable]
estimation_slice.c:116:10: warning: unused variable 'SSR1' [-Wunused-variable]
estimation_slice.c:115:25: warning: unused variable 'dens_epsilon_new' [-Wunused-variable]
estimation_slice.c:115:10: warning: unused variable 'dens_epsilon' [-Wunused-variable]
estimation_slice.c:114:22: warning: unused variable 'l_epsilon_new' [-Wunused-variable]
estimation_slice.c:114:10: warning: unused variable 'l_epsilon' [-Wunused-variable]
estimation_slice.c:113:27: warning: unused variable 'lambda_eps2_new' [-Wunused-variable]
estimation_slice.c:113:10: warning: unused variable 'lambda_eps1_new' [-Wunused-variable]
estimation_slice.c: In function 'slice_sampling_lambda_eps':
estimation_slice.c:484:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
estimation_slice.c:493:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function 'mcmc':
ex_estimation_slice.c:144:10: warning: unused variable 'old_a' [-Wunused-variable]
ex_estimation_slice.c:143:10: warning: unused variable 'old_b' [-Wunused-variable]
ex_estimation_slice.c:138:10: warning: unused variable 'sum_res2' [-Wunused-variable]
ex_estimation_slice.c:137:10: warning: unused variable 'sum_res1' [-Wunused-variable]
ex_estimation_slice.c:119:19: warning: unused variable 'dens_t_new' [-Wunused-variable]
ex_estimation_slice.c:119:10: warning: unused variable 'dens_t' [-Wunused-variable]
ex_estimation_slice.c:112:10: warning: unused variable 'pi' [-Wunused-variable]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c mean.sd.c -o mean.sd.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c reorder.c -o reorder.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c util.c -o util.o
util.c: In function 'product_mat_vec':
util.c:574:11: warning: unused variable 'k' [-Wunused-variable]
util.c: In function 'slice_sampling_a':
util.c:629:3: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
util.c:629:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:636:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:643:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:613:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_b':
util.c:703:3: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
util.c:703:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:710:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:717:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:686:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_b2':
util.c:767:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:775:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c: In function 'slice_sampling_a2':
util.c:822:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:830:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c: In function 'slice_sampling_rho':
util.c:876:3: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
util.c:876:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:883:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:890:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:860:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_rho2':
util.c:935:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:944:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c: In function 'slice_sampling_shift':
util.c:1019:3: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
util.c:1019:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1026:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1033:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1000:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_shift2':
util.c:1100:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1108:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1082:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_p':
util.c:1248:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1256:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -shared -s -static-libgcc -o rama.dll tmp.def estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/rama.buildbin-libdir/rama/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'rama.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'rama' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c estimation_slice.c -o estimation_slice.o
estimation_slice.c: In function 'mcmc_shift':
estimation_slice.c:122:10: warning: unused variable 'SSeps_sd_new' [-Wunused-variable]
estimation_slice.c:121:10: warning: unused variable 'SSeps_sd' [-Wunused-variable]
estimation_slice.c:117:10: warning: unused variable 'pi' [-Wunused-variable]
estimation_slice.c:116:24: warning: unused variable 'SS12' [-Wunused-variable]
estimation_slice.c:116:17: warning: unused variable 'SSR2' [-Wunused-variable]
estimation_slice.c:116:10: warning: unused variable 'SSR1' [-Wunused-variable]
estimation_slice.c:115:25: warning: unused variable 'dens_epsilon_new' [-Wunused-variable]
estimation_slice.c:115:10: warning: unused variable 'dens_epsilon' [-Wunused-variable]
estimation_slice.c:114:22: warning: unused variable 'l_epsilon_new' [-Wunused-variable]
estimation_slice.c:114:10: warning: unused variable 'l_epsilon' [-Wunused-variable]
estimation_slice.c:113:27: warning: unused variable 'lambda_eps2_new' [-Wunused-variable]
estimation_slice.c:113:10: warning: unused variable 'lambda_eps1_new' [-Wunused-variable]
estimation_slice.c: In function 'slice_sampling_lambda_eps':
estimation_slice.c:484:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
estimation_slice.c:493:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c: In function 'mcmc':
ex_estimation_slice.c:144:10: warning: unused variable 'old_a' [-Wunused-variable]
ex_estimation_slice.c:143:10: warning: unused variable 'old_b' [-Wunused-variable]
ex_estimation_slice.c:138:10: warning: unused variable 'sum_res2' [-Wunused-variable]
ex_estimation_slice.c:137:10: warning: unused variable 'sum_res1' [-Wunused-variable]
ex_estimation_slice.c:119:19: warning: unused variable 'dens_t_new' [-Wunused-variable]
ex_estimation_slice.c:119:10: warning: unused variable 'dens_t' [-Wunused-variable]
ex_estimation_slice.c:112:10: warning: unused variable 'pi' [-Wunused-variable]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c mean.sd.c -o mean.sd.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c reorder.c -o reorder.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c util.c -o util.o
util.c: In function 'product_mat_vec':
util.c:574:11: warning: unused variable 'k' [-Wunused-variable]
util.c: In function 'slice_sampling_a':
util.c:629:3: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
util.c:629:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:636:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:643:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:613:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_b':
util.c:703:3: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
util.c:703:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:710:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:717:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:686:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_b2':
util.c:767:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:775:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c: In function 'slice_sampling_a2':
util.c:822:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:830:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c: In function 'slice_sampling_rho':
util.c:876:3: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
util.c:876:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:883:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:890:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:860:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_rho2':
util.c:935:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:944:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c: In function 'slice_sampling_shift':
util.c:1019:3: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
util.c:1019:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1026:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1033:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1000:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_shift2':
util.c:1100:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1108:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1082:13: warning: unused variable 'v' [-Wunused-variable]
util.c: In function 'slice_sampling_p':
util.c:1248:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
util.c:1256:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m64 -shared -s -static-libgcc -o rama.dll tmp.def estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/rama.buildbin-libdir/rama/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rama' as rama_1.28.0.zip

* DONE (rama)