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Package 96/514HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.4.0
Stephen Nyangoma
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/clippda
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: clippda
Version: 1.4.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings clippda_1.4.0.tar.gz
StartedAt: 2012-03-23 23:48:58 -0700 (Fri, 23 Mar 2012)
EndedAt: 2012-03-23 23:55:21 -0700 (Fri, 23 Mar 2012)
EllapsedTime: 383.0 seconds
RetCode: 0
Status:  OK 
CheckDir: clippda.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/clippda.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘clippda/DESCRIPTION’ ... OK
* this is package ‘clippda’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘clippda’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely ‘inst/CITATION’ should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

clippda.Rcheck/00install.out:

* installing *source* package ‘clippda’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘clippda.Rnw’ 
** testing if installed package can be loaded

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
ZvaluescasesVcontrolsPlots0.0120.0040.016
ZvaluesfrommultinomPlots1.7000.0161.744
aclinicalProteomicsData-class0.0960.0000.100
aclinicalProteomicsData-methods0.4600.1440.603
betweensampleVariance4.9920.0725.201
checkNo.replicates0.3560.0160.401
clippda-package144.101 0.308145.909
f000
fisherInformation0.1000.0000.097
liverRawData0.0120.0000.014
liver_pheno0.0040.0000.002
liverdata4.4000.0084.446
mostSimilarTwo0.0000.0000.002
negativeIntensitiesCorrection1.3960.0041.445
phenoDataFrame0.0800.0000.095
pheno_urine0.0040.0000.003
preProcRepeatedPeakData4.0490.0084.179
proteomicsExprsData0.3200.0000.336
proteomicspData0.0720.0040.078
replicateCorrelations7.6120.0047.700
sampleClusteredData1.4600.0001.458
sampleSize91.058 0.15292.914
sampleSize3DscatterPlots0.0280.0000.026
sampleSizeContourPlots0.0480.0000.050
sampleSizeParameters44.259 0.04444.973
sample_technicalVariance11.216 0.04411.531
spectrumFilter3.8530.0044.020
ztwo000