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Package 418/514HostnameOS / ArchBUILDCHECKBUILD BIN
Rgraphviz 1.32.0
Kasper Hansen
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/Rgraphviz
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: Rgraphviz
Version: 1.32.0
Command: rm -rf Rgraphviz.buildbin-libdir && mkdir Rgraphviz.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Rgraphviz.buildbin-libdir Rgraphviz_1.32.0.tar.gz >Rgraphviz-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=Rgraphviz.buildbin-libdir --install="check:Rgraphviz-install.out" --force-multiarch --no-vignettes --timings Rgraphviz_1.32.0.tar.gz && mv Rgraphviz.buildbin-libdir/* Rgraphviz.Rcheck/ && rmdir Rgraphviz.buildbin-libdir
StartedAt: 2012-03-24 02:43:38 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 02:44:43 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 65.6 seconds
RetCode: 0
Status:  OK  
CheckDir: Rgraphviz.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/Rgraphviz.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* this is package 'Rgraphviz' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'Rgraphviz' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Rgraphviz.Rcheck/00install.out:


install for i386

* installing *source* package 'Rgraphviz' ...
Using the following environment variables
GRAPHVIZ_INSTALL_DIR=c:/graphviz2.20
GRAPHVIZ_INSTALL_MAJOR=2
GRAPHVIZ_INSTALL_MINOR=20
GRAPHVIZ_INSTALL_SUBMINOR=3
Using the following compilation and linking flags for Rgraphviz
   PKG_CPPFLAGS=-Ic:/graphviz2.20/include/graphviz
   PKG_LIBS=-Lc:/graphviz2.20/bin -lgvc-4 -lgraph-4 -lcdt-4
   GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32
Created file src/Makevars.win
Created file R/graphviz_build_version.R
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c LL_funcs.c -o LL_funcs.o
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:464:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c Rgraphviz.c -o Rgraphviz.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c RgraphvizInit.c -o RgraphvizInit.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c agopen.c -o agopen.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c agread.c -o agread.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c agwrite.c -o agwrite.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c bezier.c -o bezier.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c buildEdgeList.c -o buildEdgeList.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c buildNodeList.c -o buildNodeList.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c doLayout.c -o doLayout.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c graphvizVersion.c -o graphvizVersion.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz2.20/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=20 -DWin32         -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -Lc:/graphviz2.20/bin -lgvc-4 -lgraph-4 -lcdt-4 -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/i386
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'head' from package 'utils' in package 'Rgraphviz'
Creating a generic function for 'tail' from package 'utils' in package 'Rgraphviz'
Creating a generic function for 'lines' from package 'graphics' in package 'Rgraphviz'
Creating a generic function for 'plot' from package 'graphics' in package 'Rgraphviz'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'Rgraphviz.Rnw' 
   'newRgraphvizInterface.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'Rgraphviz' ...
Using the following environment variables
GRAPHVIZ_INSTALL_DIR=c:/graphviz64
GRAPHVIZ_INSTALL_MAJOR=2
GRAPHVIZ_INSTALL_MINOR=25
GRAPHVIZ_INSTALL_SUBMINOR=20090912.0445
Using the following compilation and linking flags for Rgraphviz
   PKG_CPPFLAGS=-Ic:/graphviz64/include/graphviz
   PKG_LIBS=-Lc:/graphviz64/bin -lgvc-5 -lgraph-4 -lcdt-4
   GVIZ_DEFS=-DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32
Created file src/Makevars.win
Created file R/graphviz_build_version.R
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LL_funcs.c -o LL_funcs.o
LL_funcs.c: In function 'Rgraphviz_agopenSimple':
LL_funcs.c:464:29: warning: variable 'curNode' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c Rgraphviz.c -o Rgraphviz.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c RgraphvizInit.c -o RgraphvizInit.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c agopen.c -o agopen.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c agread.c -o agread.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c agwrite.c -o agwrite.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c bezier.c -o bezier.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c buildEdgeList.c -o buildEdgeList.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c buildNodeList.c -o buildNodeList.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c doLayout.c -o doLayout.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c graphvizVersion.c -o graphvizVersion.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -Ic:/graphviz64/include/graphviz -DGRAPHVIZ_MAJOR=2 -DGRAPHVIZ_MINOR=25 -DWin32    -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m64 -shared -s -static-libgcc -o Rgraphviz.dll tmp.def LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -Lc:/graphviz64/bin -lgvc-5 -lgraph-4 -lcdt-4 -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/Rgraphviz.buildbin-libdir/Rgraphviz/libs/x64
** testing if installed package can be loaded
Warning message:
In fun(libname, pkgname) : Rgraphviz built with Graphviz version 2.20.3.
Found installed Graphviz version 2.25.20090912.445. This _may_ cause problems.
* MD5 sums
packaged installation of 'Rgraphviz' as Rgraphviz_1.32.0.zip

* DONE (Rgraphviz)