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Package 412/514HostnameOS / ArchBUILDCHECKBUILD BIN
REDseq 1.0.0
Lihua Julie Zhu
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/REDseq
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: REDseq
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch REDseq_1.0.0.tar.gz
StartedAt: 2012-03-24 03:39:04 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 03:43:19 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 254.9 seconds
RetCode: 0
Status:  OK 
CheckDir: REDseq.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/REDseq.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'REDseq/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'REDseq' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'REDseq' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

REDseq.Rcheck/00install.out:

* installing *source* package 'REDseq' ...
** R
** data
** inst
** preparing package for lazy loading
Warning: replacing previous import 'space' when loading 'IRanges'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'REDseq.Rnw' 
** testing if installed package can be loaded
Warning message:
replacing previous import 'space' when loading 'IRanges' 

* DONE (REDseq)

REDseq.Rcheck/REDseq-Ex.timings:

nameusersystemelapsed
REDseq-package0.0040.0010.005
assignSeq2REsite1.2000.0211.222
binom.test.REDseq0.0200.0000.021
buildREmap7.8610.6228.598
compareREDseq0.0320.0010.032
distanceHistSeq2RE0.0210.0040.024
example.REDseq0.0030.0010.004
example.assignedREDseq0.0040.0010.005
example.map0.0030.0010.004
plotCutDistribution0.0520.0030.055
searchPattern4.4680.3334.809
summarizeByRE0.0080.0010.010
summarizeBySeq0.0080.0010.010
writeHits0.0120.0000.013