Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 47/514HostnameOS / ArchBUILDCHECKBUILD BIN
BayesPeak 1.6.0
Jonathan Cairns
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/BayesPeak
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: BayesPeak
Version: 1.6.0
Command: rm -rf BayesPeak.buildbin-libdir && mkdir BayesPeak.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=BayesPeak.buildbin-libdir BayesPeak_1.6.0.tar.gz >BayesPeak-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=BayesPeak.buildbin-libdir --install="check:BayesPeak-install.out" --force-multiarch --no-vignettes --timings BayesPeak_1.6.0.tar.gz && mv BayesPeak.buildbin-libdir/* BayesPeak.Rcheck/ && rmdir BayesPeak.buildbin-libdir
StartedAt: 2012-03-24 00:29:17 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 00:42:48 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 811.1 seconds
RetCode: 0
Status:  OK  
CheckDir: BayesPeak.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/BayesPeak.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BayesPeak/DESCRIPTION' ... OK
* this is package 'BayesPeak' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'multicore'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'BayesPeak' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.9Mb
  sub-directories of 1Mb or more:
    data      1.2Mb
    extdata   5.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'multicore'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'overfittingDiagnostics':
  'plot.overfitdiag' 'identify.overfitdiag'

S3 methods shown with full name in documentation object 'plot.PP':
  'plot.PP'

S3 methods shown with full name in documentation object 'plot.bed':
  'plot.bed'

S3 methods shown with full name in documentation object 'plot.job':
  'plot.job'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                         old_size new_size compress
  raw.output.H3K4me3.rda     76Kb     66Kb       xz
  raw.output.rda            1.1Mb    978Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

BayesPeak.Rcheck/00install.out:


install for i386

* installing *source* package 'BayesPeak' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c bayespeak.c -o bayespeak.o
bayespeak.c: In function 'bayespeak':
bayespeak.c:176:27: warning: variable 'M' set but not used [-Wunused-but-set-variable]
gcc -shared -s -static-libgcc -o BayesPeak.dll tmp.def bayespeak.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/BayesPeak.buildbin-libdir/BayesPeak/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'BayesPeak.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'BayesPeak' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c bayespeak.c -o bayespeak.o
bayespeak.c: In function 'bayespeak':
bayespeak.c:176:27: warning: variable 'M' set but not used [-Wunused-but-set-variable]
gcc -m64 -shared -s -static-libgcc -o BayesPeak.dll tmp.def bayespeak.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/BayesPeak.buildbin-libdir/BayesPeak/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BayesPeak' as BayesPeak_1.6.0.zip

* DONE (BayesPeak)