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Package 428/479HostnameOS / ArchBUILDCHECKBUILD BIN
simpleaffy 2.29.0
Crispin Miller
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/simpleaffy
Last Changed Rev: 54802 / Revision: 56603
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: simpleaffy
Version: 2.29.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings simpleaffy_2.29.0.tar.gz
StartedAt: 2011-07-07 02:17:44 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 02:20:04 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 139.9 seconds
RetCode: 0
Status:  OK 
CheckDir: simpleaffy.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/simpleaffy.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘simpleaffy/DESCRIPTION’ ... OK
* this is package ‘simpleaffy’ version ‘2.29.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘simpleaffy’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

simpleaffy.Rcheck/00install.out:

* installing *source* package ‘simpleaffy’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c simpleaffy.c -o simpleaffy.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o simpleaffy.so simpleaffy.o -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/simpleaffy.Rcheck/simpleaffy/libs
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘simpleAffy.Rnw’ 
** testing if installed package can be loaded

* DONE (simpleaffy)

simpleaffy.Rcheck/simpleaffy-Ex.timings:

nameusersystemelapsed
all.present000
all.present.in.group000
bg.correct.sa000
call.exprs000
detection.p.val0.0000.0000.001
get.annotation000
get.array.indices000
get.array.subset000
get.array.subset.affy000
get.fold.change.and.t.test000
hmap.colors000
hmap.eset000
hmap.pc000
journalpng0.0000.0000.001
justMAS000
pairwise.comparison0.0040.0000.000
pairwise.filter000
plot.pairwise.comparison000
plot.qc.stats0.2680.0000.269
qc0.0520.0040.055
qc.affy0.0480.0040.049
qc.get.alpha10.0040.0000.005
qc.get.array0.0000.0000.001
qc.get.probes0.0000.0040.004
qc.get.ratios0.0040.0000.004
qc.get.spikes000
qc.have.params0.0080.0080.015
qc.ok0.0040.0000.004
qc.read.file0.0080.0000.007
qc.stats0.040.000.04
read.affy000
read.affy.mixed000
setQCEnvironment0.0120.0000.012
simpleaffy-deprecated0.0160.0000.020
standard.pearson0.0000.0000.001
trad.scatter.plot000