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Package 425/479HostnameOS / ArchBUILDCHECKBUILD BIN
siggenes 1.27.1
Holger Schwender
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/siggenes
Last Changed Rev: 55015 / Revision: 56603
Last Changed Date: 2011-04-21 08:11:22 -0700 (Thu, 21 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: siggenes
Version: 1.27.1
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings siggenes_1.27.1.tar.gz
StartedAt: 2011-07-07 02:16:13 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 02:17:09 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 55.8 seconds
RetCode: 0
Status:  OK 
CheckDir: siggenes.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/siggenes.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘siggenes/DESCRIPTION’ ... OK
* this is package ‘siggenes’ version ‘1.27.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘siggenes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

siggenes.Rcheck/00install.out:

* installing *source* package ‘siggenes’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a generic function for "print" from package "base" in package “siggenes”
Creating a generic function for "identify" from package "graphics" in package “siggenes”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘siggenes.Rnw’ 
** testing if installed package can be loaded

* DONE (siggenes)

siggenes.Rcheck/siggenes-Ex.timings:

nameusersystemelapsed
EBAM-class0.0000.0000.001
SAM-class000
chisq.ebam0.0040.0000.000
chisq.stat000
delta.plot000
denspr000
ebam000
find.a0000
help.ebam000
help.finda0000
help.sam000
list.siggenes000
md.plot000
pi0.est000
qvalue.cal000
sam0.0000.0000.001
sam.plot2000
trend.ebam000
trend.stat000