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Package 368/479HostnameOS / ArchBUILDCHECKBUILD BIN
qtbase 0.8-14
Michael Lawrence
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/qtbase
Last Changed Rev: 55980 / Revision: 56603
Last Changed Date: 2011-06-03 07:03:19 -0700 (Fri, 03 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ WARNINGS ]
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pitt Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: qtbase
Version: 0.8-14
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings qtbase_0.8-14.tar.gz
StartedAt: 2011-07-07 01:55:22 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 01:59:46 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 263.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: qtbase.Rcheck
Warnings: 6

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘qtbase/DESCRIPTION’ ... OK
* this is package ‘qtbase’ version ‘0.8-14’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory ‘qtbase/src’ contains object files.
* checking whether package ‘qtbase’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 64.1Mb
  sub-directories of 1Mb or more:
    local  37.4Mb
    qdoc    3.4Mb
    libs   22.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... WARNING
Error: .onLoad failed in loadNamespace() for ‘qtbase’, details:
  call: stopifnot(is(x, "RQtClass"))
  error: could not find function "is"
Execution halted

A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.

Probably some imports need to be declared in the NAMESPACE file.
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
as.QImage:
  function(x, ...)
as.QImage.matrix:
  function(x)

as.QImage:
  function(x, ...)
as.QImage.raster:
  function(x)

print:
  function(x, ...)
print.QtEnum:
  function(x)

See section ‘Generic functions and methods’ of the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Error: bad assignment: ‘Qt$QApplication$instance()$styleSheet <- style’
Execution halted
* checking Rd files ... NOTE
prepare_Rd: qsetStyleSheet.Rd:37-39: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘as.QImage’ ‘qfindChild’ ‘qmocMethods’ ‘qrTextFormattingDelegate’
  ‘qsetProperty’ ‘qsetSignal’ ‘qsetSlot’ ‘qsignals’ ‘qslots’
All user-level objects in a package should have documentation entries.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'DataFrameModel':
qdataFrameModel
  Code: function(df, parent = NULL, ...)
  Docs: function(df, ...)
  Argument names in code not in docs:
    parent
  Mismatches in argument names:
    Position: 2 Code: parent Docs: ...

Codoc mismatches from documentation object 'constructors':
qfont
  Code: function(family = baseFont$family(), pointsize =
                 baseFont$pointSize(), weight = baseFont$weight(),
                 italic = baseFont$style() == Qt$QFont$StyleItalic,
                 baseFont = Qt$QApplication$font())
  Docs: function(family = "Arial", pointsize = -1L, weight = -1L,
                 italic = FALSE)
  Argument names in code not in docs:
    baseFont
  Mismatches in argument default values (first 3):
    Name: 'family' Code: baseFont$family() Docs: "Arial"
    Name: 'pointsize' Code: baseFont$pointSize() Docs: -1L
    Name: 'weight' Code: baseFont$weight() Docs: -1L

Codoc mismatches from documentation object 'qsetClass':
qsetMethod
  Code: function(name, class, FUN, access = c("public", "protected",
                 "private"))
  Docs: function(name, class, FUN, access = c("public", "protected",
                 "private"), slot = FALSE)
  Argument names in docs not in code:
    slot

* checking Rd \usage sections ... WARNING
Bad \usage lines found in documentation object 'DataFrameModel':
  qdataFrame<-(model, useRoles=FALSE, editable=character(0), value)

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘slots.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 6 warnings, see
  ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00check.log’
for details

qtbase.Rcheck/00install.out:

* installing *source* package ‘qtbase’ ...
** libs
** arch - 
mkdir -p ../kdebindings-build;
cd ../kdebindings-build; \
cmake ../kdebindings -DCMAKE_INSTALL_PREFIX=../inst/local; \
LD_LIBRARY_PATH=../../generator/bin make install
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found.
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found.
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found.
-- Found Qt-Version 4.7.1 (using /usr/bin/qmake)
Qt QTDECLARATIVE library not found.
Qt QTWEBKIT library not found.
Qt QTXMLPATTERNS library not found.
-- Found Perl: /usr/bin/perl 
-- Checking how Qt was built...
-- Threshold is set to 10
-- QT_NO_DEBUG *Undefined*
-- QT_NO_ACCESSIBILITY *Undefined*
-- QT_NO_BUTTONGROUP *Undefined*
-- QT_NO_COLORDIALOG *Undefined*
-- QT_NO_DATETIMEEDIT *Undefined*
-- QT_NO_DIALOG *Undefined*
-- QT_NO_ERRORMESSAGE *Undefined*
-- QT_NO_FILEDIALOG *Undefined*
-- QT_NO_FONTDIALOG *Undefined*
-- QT_NO_GROUPBOX *Undefined*
-- QT_NO_LCDNUMBER *Undefined*
-- QT_NO_LINEEDIT *Undefined*
-- QT_NO_LISTVIEW *Undefined*
-- QT_NO_MAINWINDOW *Undefined*
-- QT_NO_MENUBAR *Undefined*
-- QT_NO_MESSAGEBOX *Undefined*
-- QT_NO_PRINTDIALOG *Undefined*
-- QT_NO_PROGRESSBAR *Undefined*
-- QT_NO_PROGRESSDIALOG *Undefined*
-- QT_NO_PUSHBUTTON *Undefined*
-- QT_NO_RADIOBUTTON *Undefined*
-- QT_NO_SCROLLBAR *Undefined*
-- QT_NO_SLIDER *Undefined*
-- QT_NO_STYLE_PLASTIQUE *Undefined*
-- QT_NO_STYLE_WINDOWSXP [Defined]
-- QT_NO_STYLE_WINDOWS *Undefined*
-- QT_NO_STYLE_MAC [Defined]
-- QT_NO_STYLE_CLEANLOOKS *Undefined*
-- QT_NO_TABLEVIEW *Undefined*
-- QT_NO_TEXTBROWSER *Undefined*
-- QT_NO_TEXTEDIT *Undefined*
-- QT_NO_TOOLBUTTON *Undefined*
-- QT_OPENGL_LIB [Defined]
-- QT_SCRIPT_LIB [Defined]
-- QT_SVG_LIB [Defined]
-- QT_HELP_LIB [Defined]
-- QT_MULTIMEDIA_LIB [Defined]
-- QT_GUI_LIB [Defined]
-- QT_TEST_LIB [Defined]
-- QT_DBUS_LIB [Defined]
-- QT_XML_LIB [Defined]
-- QT_SQL_LIB [Defined]
-- QT_NETWORK_LIB [Defined]
-- QT_CORE_LIB [Defined]
-- Build Smoke... yes - Qt
-- Configuring done
-- Generating done
-- Build files have been written to: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build
make[1]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[2]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Scanning dependencies of target cppparser
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[  1%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/ast.cpp.o
[  3%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/default_visitor.cpp.o
[  4%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/memorypool.cpp.o
[  6%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/visitor.cpp.o
[  8%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/control.cpp.o
[  9%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/lexer.cpp.o
[ 11%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/parser.cpp.o
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.h:36,
                 from /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:23:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:1036:2: warning: #warning "implement me"
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:2604:2: warning: #warning "implemente me (AST)"
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:3490:2: warning: #warning "mark the ast as constant"
[ 13%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/listnode.cpp.o
[ 14%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/tokens.cpp.o
[ 16%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/dumptree.cpp.o
[ 18%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/parsesession.cpp.o
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp: In destructor ‘ParseSession::˜ParseSession()’:
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp:42:10: warning: possible problem detected in invocation of delete operator:
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp:42:10: warning: invalid use of incomplete type ‘struct rpp::MacroBlock’
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.h:43:23: warning: forward declaration of ‘struct rpp::MacroBlock’
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp:42:10: note: neither the destructor nor the class-specific operator delete will be called, even if they are declared when the class is defined.
[ 19%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/commentparser.cpp.o
[ 21%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/commentformatter.cpp.o
[ 22%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/codegenerator.cpp.o
[ 24%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/indexedstring.cpp.o
[ 26%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/stringhelpers.cpp.o
[ 27%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-stream.cpp.o
[ 29%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-macro-expander.cpp.o
[ 31%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-scanner.cpp.o
[ 32%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-macro.cpp.o
[ 34%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-engine.cpp.o
[ 36%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-internal.cpp.o
[ 37%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-environment.cpp.o
[ 39%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-location.cpp.o
[ 40%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/preprocessor.cpp.o
[ 42%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/chartools.cpp.o
Linking CXX shared library ../bin/libcppparser.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 42%] Built target cppparser
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Scanning dependencies of target smokegen
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 44%] Building CXX object generator/CMakeFiles/smokegen.dir/main.cpp.o
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
                 from /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.h:36,
                 from /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/main.cpp:32:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
[ 45%] Building CXX object generator/CMakeFiles/smokegen.dir/generatorenvironment.cpp.o
[ 47%] Building CXX object generator/CMakeFiles/smokegen.dir/generatorvisitor.cpp.o
[ 49%] Building CXX object generator/CMakeFiles/smokegen.dir/generatorpreprocessor.cpp.o
[ 50%] Building CXX object generator/CMakeFiles/smokegen.dir/options.cpp.o
[ 52%] Building CXX object generator/CMakeFiles/smokegen.dir/type_compiler.cpp.o
[ 54%] Building CXX object generator/CMakeFiles/smokegen.dir/name_compiler.cpp.o
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/name_compiler.cpp:139:2: warning: #warning "NameCompiler::visitUnqualifiedName() -- implement me"
[ 55%] Building CXX object generator/CMakeFiles/smokegen.dir/type.cpp.o
Linking CXX executable bin/smokegen
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 55%] Built target smokegen
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Scanning dependencies of target generator_smoke
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 57%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/generator_smoke.cpp.o
[ 59%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/writeClasses.cpp.o
[ 60%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/writeSmokeDataFile.cpp.o
[ 62%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/helpers.cpp.o
Linking CXX shared module ../../bin/generator_smoke.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 62%] Built target generator_smoke
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Scanning dependencies of target generator_dump
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 63%] Building CXX object generator/generators/dump/CMakeFiles/generator_dump.dir/generator_dump.cpp.o
Linking CXX shared module ../../bin/generator_dump.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 63%] Built target generator_dump
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 65%] Generating smokedata.cpp, x_1.cpp, x_2.cpp, x_3.cpp, x_4.cpp, x_5.cpp, x_6.cpp, x_7.cpp, x_8.cpp, x_9.cpp, x_10.cpp, x_11.cpp, x_12.cpp, x_13.cpp, x_14.cpp, x_15.cpp, x_16.cpp, x_17.cpp, x_18.cpp, x_19.cpp, x_20.cpp
using generator "/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build/generator/bin/generator_smoke.so" 
include directory "QT_QTXMLPATTERNS_INCLUDE_DIR-NOTFOUND" doesn't exist 
include directory "QT_QTWEBKIT_INCLUDE_DIR-NOTFOUND" doesn't exist 
include directory "QT_QTDECLARATIVE_INCLUDE_DIR-NOTFOUND" doesn't exist 
parsing "/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/smoke/qt/qt_includes.h" 
Generating SMOKE sources... 
preparing SMOKE data [qt]
writing out smokedata.cpp [qt]
writing out x_*.cpp [qt]
Done. 
Scanning dependencies of target smokeqt
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 67%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/smokedata.cpp.o
[ 68%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_1.cpp.o
[ 70%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_2.cpp.o
[ 72%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_3.cpp.o
[ 73%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_4.cpp.o
[ 75%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_5.cpp.o
[ 77%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_6.cpp.o
[ 78%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_7.cpp.o
[ 80%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_8.cpp.o
[ 81%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_9.cpp.o
[ 83%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_10.cpp.o
[ 85%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_11.cpp.o
[ 86%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_12.cpp.o
[ 88%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_13.cpp.o
[ 90%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_14.cpp.o
[ 91%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_15.cpp.o
[ 93%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_16.cpp.o
[ 95%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_17.cpp.o
[ 96%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_18.cpp.o
[ 98%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_19.cpp.o
[100%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_20.cpp.o
Linking CXX static library libsmokeqt.a
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[100%] Built target smokeqt
make[2]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[2]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Linking CXX executable CMakeFiles/CMakeRelink.dir/smokegen
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make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Linking CXX shared library CMakeFiles/CMakeRelink.dir/libcppparser.so
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make[2]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Install the project...
-- Install configuration: ""
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/bin/smokegen
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generatorenvironment.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generator_export.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generatorpreprocessor.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generatorvisitor.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/name_compiler.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/options.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/type_compiler.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/type.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/libcppparser.so
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/smokegen/generator_smoke.so
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/smokegen/generator_dump.so
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smoke.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smoke/qt_smoke.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/libsmokeqt.a
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/share/kdebindings/qtdefines
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/share/kdebindings/config.xml
make[1]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
mkdir -p ../src-build;
cd ../src-build; \
cmake ../src \
      -DR_LIBRARIES="-L/home/biocbuild/bbs-2.9-bioc/R/lib -lR" \
      -DR_INCLUDES=/home/biocbuild/bbs-2.9-bioc/R/include \
      -DCMAKE_INSTALL_PREFIX=../src; \
make install
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found.
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found.
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found.
-- Found Qt-Version 4.7.1 (using /usr/bin/qmake)
Qt QTDECLARATIVE library not found.
Qt QTWEBKIT library not found.
Qt QTXMLPATTERNS library not found.
-- Configuring done
-- Generating done
-- Build files have been written to: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build
make[1]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
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make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
[  2%] Generating moc_EventLoop.cxx
Scanning dependencies of target qtbase
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
[  5%] Building CXX object CMakeFiles/qtbase.dir/init.cpp.o
[  7%] Building CXX object CMakeFiles/qtbase.dir/EventLoop.cpp.o
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src/EventLoop.cpp:23:50: warning: deprecated conversion from string constant to ‘char*’
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src/EventLoop.cpp:23:50: warning: deprecated conversion from string constant to ‘char*’
[ 10%] Building CXX object CMakeFiles/qtbase.dir/convert.cpp.o
[ 13%] Building CXX object CMakeFiles/qtbase.dir/wrap.cpp.o
[ 15%] Building CXX object CMakeFiles/qtbase.dir/metaobject.cpp.o
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[ 31%] Building CXX object CMakeFiles/qtbase.dir/Class.cpp.o
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[ 36%] Building CXX object CMakeFiles/qtbase.dir/MocClass.cpp.o
[ 39%] Building CXX object CMakeFiles/qtbase.dir/RClass.cpp.o
[ 42%] Building CXX object CMakeFiles/qtbase.dir/classes.cpp.o
[ 44%] Building CXX object CMakeFiles/qtbase.dir/ForeignMethod.cpp.o
[ 47%] Building CXX object CMakeFiles/qtbase.dir/SmokeMethod.cpp.o
[ 50%] Building CXX object CMakeFiles/qtbase.dir/RMethod.cpp.o
[ 52%] Building CXX object CMakeFiles/qtbase.dir/MocMethod.cpp.o
[ 55%] Building CXX object CMakeFiles/qtbase.dir/DynamicBinding.cpp.o
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[ 60%] Building CXX object CMakeFiles/qtbase.dir/MethodCall.cpp.o
[ 63%] Building CXX object CMakeFiles/qtbase.dir/type-handlers.cpp.o
[ 65%] Building CXX object CMakeFiles/qtbase.dir/MocStack.cpp.o
[ 68%] Building CXX object CMakeFiles/qtbase.dir/MocProperty.cpp.o
[ 71%] Building CXX object CMakeFiles/qtbase.dir/RProperty.cpp.o
[ 73%] Building CXX object CMakeFiles/qtbase.dir/SmokeModule.cpp.o
[ 76%] Building CXX object CMakeFiles/qtbase.dir/module.cpp.o
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[ 92%] Building CXX object CMakeFiles/qtbase.dir/smoke.cpp.o
[ 94%] Building CXX object CMakeFiles/qtbase.dir/DataFrameModel.cpp.o
[ 97%] Building CXX object CMakeFiles/qtbase.dir/RTextFormattingDelegate.cpp.o
[100%] Building CXX object CMakeFiles/qtbase.dir/moc_EventLoop.cxx.o
Linking CXX shared library qtbase.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
[100%] Built target qtbase
make[2]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[2]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
Linking CXX shared library CMakeFiles/CMakeRelink.dir/qtbase.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[2]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
Install the project...
-- Install configuration: ""
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src/./qtbase.so
make[1]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/qtbase/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘qtbase.Rnw’ 
** testing if installed package can be loaded

* DONE (qtbase)

qtbase.Rcheck/qtbase-Ex.timings:

nameusersystemelapsed
RQtClass0.0640.0000.061
RQtLibrary0.0080.0040.013
RQtObject0.0240.0000.021
constructors0.0400.0000.041
qconnect0.0080.0000.010
qinvoke0.0040.0000.003
qlibrary0.0120.0000.010
qmethods0.0160.0000.015
qsetClass0.0480.0000.060
qtimer0.0080.0040.009