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Package 352/479HostnameOS / ArchBUILDCHECKBUILD BIN
plateCore 1.11.0
Errol Strain
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/plateCore
Last Changed Rev: 56090 / Revision: 56603
Last Changed Date: 2011-06-09 17:02:42 -0700 (Thu, 09 Jun 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: plateCore
Version: 1.11.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings plateCore_1.11.0.tar.gz
StartedAt: 2011-07-07 01:49:57 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 01:53:18 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 200.8 seconds
RetCode: 0
Status:  OK 
CheckDir: plateCore.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/plateCore.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘plateCore/DESCRIPTION’ ... OK
* this is package ‘plateCore’ version ‘1.11.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘plateCore’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

plateCore.Rcheck/00install.out:

* installing *source* package ‘plateCore’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

Attaching package: ‘flowCore’

The following object(s) are masked from ‘package:stats’:

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: ‘latticeExtra’

The following object(s) are masked from ‘package:flowViz’:

    ecdfplot

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘plateCoreVig.Rnw’ 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (plateCore)

plateCore.Rcheck/plateCore-Ex.timings:

nameusersystemelapsed
Subset-methods4.9280.0364.966
applyControlGates-methods16.569 0.00816.580
compensate-methods6.4120.0046.420
compensationSet0.1760.0120.184
densityplot-methods1.7290.0041.731
fixAutoFl-methods6.2160.0046.227
flowPlate-class3.580.003.64
flowPlate-method3.4720.0003.473
fpbind-methods8.0730.0168.087
getGroups-methods1.4840.0041.485
gutterPlot-methods1.5040.0001.501
mfiPlot-methods14.753 0.00814.763
on-methods9.4490.0249.471
panel.densityplot.flowPlate1.9320.0001.933
panel.xyplot.flowPlate1.7000.0001.705
plateCore-package3.0560.0003.057
plateSet-methods3.4360.0043.438
plotPlate-methods4.1530.0004.158
prepanel.densityplot.flowPlate1.7320.0041.730
prepanel.xyplot.flowPlate1.5440.0001.546
setControlGates-methods3.9680.0083.976
summaryStats-methods16.825 0.00416.829
wellAnnotation-methods1.5360.0041.541
xyplot-methods1.7040.0041.713