Package: OLIN

Version: 1.31.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings OLIN_1.31.0.tar.gz

StartedAt: 2011-07-07 01:38:44 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 01:40:08 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 83.9 seconds

RetCode: 0

Status:  OK

CheckDir: OLIN.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/OLIN.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OLIN/DESCRIPTION’ ... OK
* this is package ‘OLIN’ version ‘1.31.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘OLIN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘OLIN’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Loading required package: limma
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘OLIN.Rnw’ 
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 

* DONE (OLIN)

name	user	system	elapsed
anovaint	0.392	0.004	0.395
anovapin	0.292	0.008	0.299
anovaplate	0.268	0.000	0.270
anovaspatial	0.700	0.032	0.730
backgroundCorrect2	0.776	0.020	0.802
bas	0.056	0.004	0.057
colorbar.mxy	0.068	0.000	0.068
fdr.int	0	0	0
fdr.int2	0.004	0.000	0.000
fdr.spatial	0	0	0
fdr.spatial2	0	0	0
fgbg.visu	0.200	0.000	0.199
ino	0.296	0.004	0.297
lin	1.148	0.008	1.155
m2v	0.072	0.000	0.073
ma.matrix	0.424	0.000	0.425
ma.vector	0.560	0.004	0.564
mxy.abs.plot	0.096	0.000	0.095
mxy.plot	0.096	0.000	0.097
mxy2.plot	0.136	0.004	0.143
oin	1.328	0.004	1.330
olin	26.778	0.008	27.127
p.int	0	0	0
p.int2	0.000	0.004	0.000
p.spatial	0	0	0
p.spatial2	0	0	0
sig.mask	0	0	0
sigint.plot	0	0	0
sigint.plot2	0.004	0.000	0.000
sigxy.plot	0	0	0
sigxy.plot2	0.000	0.000	0.001
v2m	0.044	0.000	0.043