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Package 309/479HostnameOS / ArchBUILDCHECKBUILD BIN
MSnbase 1.1.17
Laurent Gatto
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MSnbase
Last Changed Rev: 56585 / Revision: 56603
Last Changed Date: 2011-07-06 08:04:43 -0700 (Wed, 06 Jul 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: MSnbase
Version: 1.1.17
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings MSnbase_1.1.17.tar.gz
StartedAt: 2011-07-07 01:32:45 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 01:36:53 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 247.8 seconds
RetCode: 0
Status:  OK 
CheckDir: MSnbase.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/MSnbase.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-15 r56138)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MSnbase/DESCRIPTION’ ... OK
* this is package ‘MSnbase’ version ‘1.1.17’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘MSnbase’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test-all.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

MSnbase.Rcheck/00install.out:

* installing *source* package ‘MSnbase’ ...
** R
** data
**  moving datasets to lazyload DB
Creating a generic function for "plot" from package "graphics" in package “MSnbase”
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: reshape
Loading required package: plyr

Attaching package: ‘reshape’

The following object(s) are masked from ‘package:plyr’:

    rename, round_any

Loading required package: grid
Loading required package: proto
Creating a generic function for "plot" from package "graphics" in package “MSnbase”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘MSnbase-demo.Rnw’ 
   ‘MSnbase-development.Rnw’ 
** testing if installed package can be loaded

* DONE (MSnbase)

MSnbase.Rcheck/MSnbase-Ex.timings:

nameusersystemelapsed
MSnExp-class0.7760.0160.797
MSnProcess-class0.0040.0000.001
MSnSet-class0.9320.0200.952
NAnnotatedDataFrame-class0.0280.0000.028
ReporterIons-class0.0160.0000.014
TMT60.0120.0000.014
clean-methods0.6360.0040.640
combineFeatures0.9280.0040.932
extractPrecSpectra-methods0.5520.0000.552
extractSpectra-methods0.5400.0000.542
formatRt000
iTRAQ40.0160.0000.016
itraqdata0.8480.0200.865
normalise-methods4.6730.1045.457
pSet-class0.0040.0000.002
plot-methods4.6200.1005.663
plot2d-methods3.1800.0684.099
plotDensity-methods3.2440.0003.296
plotMzDelta-methods32.662 0.61633.506
precSelection0.0560.0000.059
purityCorrect-methods1.1000.0041.104
quantify-methods1.1120.0001.115
readIspyData000
readMzXMLData0.6320.0000.634
removePeaks-methods0.7250.0000.726
removeReporters-methods3.1960.0043.207
trimMz-methods0.6440.0000.648