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Package 27/479HostnameOS / ArchBUILDCHECKBUILD BIN
Agi4x44PreProcess 1.13.1
Pedro Lopez-Romero
Snapshot Date: 2011-07-06 19:21:50 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Agi4x44PreProcess
Last Changed Rev: 55341 / Revision: 56603
Last Changed Date: 2011-05-08 20:15:32 -0700 (Sun, 08 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: Agi4x44PreProcess
Version: 1.13.1
Command: mkdir Agi4x44PreProcess.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Agi4x44PreProcess.buildbin-libdir Agi4x44PreProcess_1.13.1.tar.gz >Agi4x44PreProcess-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=Agi4x44PreProcess.buildbin-libdir --install="check:Agi4x44PreProcess-install.out" --force-multiarch --no-vignettes --timings Agi4x44PreProcess_1.13.1.tar.gz && mv Agi4x44PreProcess.buildbin-libdir/* Agi4x44PreProcess.Rcheck/ && rmdir Agi4x44PreProcess.buildbin-libdir
StartedAt: 2011-07-07 04:01:15 -0700 (Thu, 07 Jul 2011)
EndedAt: 2011-07-07 04:03:23 -0700 (Thu, 07 Jul 2011)
EllapsedTime: 128.0 seconds
RetCode: 0
Status:  OK  
CheckDir: Agi4x44PreProcess.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/Agi4x44PreProcess.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Agi4x44PreProcess/DESCRIPTION' ... OK
* this is package 'Agi4x44PreProcess' version '1.13.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Agi4x44PreProcess' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
         old_size new_size compress
  dd.rda    1.5Mb    863Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

Agi4x44PreProcess.Rcheck/00install.out:


install for i386

* installing *source* package 'Agi4x44PreProcess' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'Agi4x44PreProcess.Rnw' using 'latin1' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'Agi4x44PreProcess' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Agi4x44PreProcess' as Agi4x44PreProcess_1.13.1.zip

* DONE (Agi4x44PreProcess)

Agi4x44PreProcess.Rcheck/Agi4x44PreProcess-Ex.timings:

nameusersystemelapsed
Agi4x44PreProcess-package000
BGandNorm000
BoxPlot000
CV.rep.probes000
HeatMap000
MVAplotMED000
MVAplotMEDctrl2.170.022.19
PCAplot000
RLE000
boxplotNegCtrl000
build.eset000
build.mappings000
dd000
ensembl.htmlpage000
filter.NonUnifOL000
filter.PopnOL000
filter.control000
filter.isfound000
filter.probes000
filter.saturated000
filter.wellaboveBG000
filter.wellaboveNEG000
genes.rpt.agi2.840.072.92
gsea.files000
hierclus000
plotDensity000
read.AgilentFE0.170.000.17
read.targets000
summarize.probe000
targets000
write.eset000