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Package 49/462HostnameOS / ArchBUILDCHECKBUILD BIN
beadarray 2.3.1
Mark Dunning
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/beadarray
Last Changed Rev: 55216 / Revision: 55359
Last Changed Date: 2011-05-03 07:49:30 -0700 (Tue, 03 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: beadarray
Version: 2.3.1
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --library=beadarray.buildbin-libdir beadarray_2.3.1.tar.gz
StartedAt: 2011-05-09 20:49:46 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 20:50:01 -0700 (Mon, 09 May 2011)
EllapsedTime: 15.3 seconds
RetCode: 0
Status:  OK  
PackageFile: beadarray_2.3.1.zip
PackageFileSize: 12.47 MiB

Command output

* installing *source* package 'beadarray' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -c BASH.c -o BASH.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -c HULK.c -o HULK.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -c determiningGridPositions.c -o determiningGridPositions.o
determiningGridPositions.c: In function 'roundLocsFileValues':
determiningGridPositions.c:7:12: warning: unused variable 'vecLength'
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -c findAllOutliers.c -o findAllOutliers.o
findAllOutliers.c: In function 'findBeadStatus':
findAllOutliers.c:155:9: warning: 'm' may be used uninitialized in this function
findAllOutliers.c:155:12: warning: 'ma' may be used uninitialized in this function
findAllOutliers.c: In function 'findAllOutliers':
findAllOutliers.c:226:20: warning: 'status' may be used uninitialized in this function
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -c imageProcessing.c -o imageProcessing.o
imageProcessing.c: In function 'illuminaBackground':
imageProcessing.c:82:0: warning: ignoring #pragma omp parallel
imageProcessing.c: In function 'medianBackground':
imageProcessing.c:126:0: warning: ignoring #pragma omp parallel
imageProcessing.c: In function 'illuminaSharpen':
imageProcessing.c:224:0: warning: ignoring #pragma omp parallel
imageProcessing.c:231:0: warning: ignoring #pragma omp parallel
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o beadarray.dll tmp.def BASH.o HULK.o determiningGridPositions.o findAllOutliers.o imageProcessing.o -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/beadarray.buildbin-libdir/beadarray/libs/x64
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "boxplot" in "beadarray"
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'ImageProcessing.rnw' 
   'beadarray.rnw' 
   'beadlevel.rnw' 
** testing if installed package can be loaded
Welcome to beadarray version 2.3.1
There have been major changes to beadarray since Bioconductor 2.6 (April 2010). Please see package vignette for details
* MD5 sums
packaged installation of 'beadarray' as beadarray_2.3.1.zip

* DONE (beadarray)