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Package 438/462HostnameOS / ArchBUILDCHECKBUILD BIN
TargetSearch 1.9.0
Alvaro Cuadros-Inostroza
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/TargetSearch
Last Changed Rev: 54802 / Revision: 55359
Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: TargetSearch
Version: 1.9.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings TargetSearch_1.9.0.tar.gz
StartedAt: 2011-05-09 20:25:56 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 20:28:32 -0700 (Mon, 09 May 2011)
EllapsedTime: 156.8 seconds
RetCode: 0
Status:  OK  
CheckDir: TargetSearch.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/TargetSearch.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TargetSearch/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TargetSearch' version '1.9.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'TargetSearch' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

TargetSearch.Rcheck/00install.out:

* installing *source* package 'TargetSearch' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c Rinit.c -o Rinit.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c find_peaks.c -o find_peaks.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c getLine.c -o getLine.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c hpf.c -o hpf.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c netcdf_peak_finding.c -o netcdf_peak_finding.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c peakExtraction.c -o peakExtraction.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c ppc.c -o ppc.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o TargetSearch.dll tmp.def Rinit.o find_peaks.o getLine.o hpf.o netcdf_peak_finding.o peakExtraction.o ppc.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/TargetSearch.Rcheck/TargetSearch/libs/x64
** R
** inst
** preparing package for lazy loading
Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'TargetSearch.Rnw' 
** testing if installed package can be loaded

* DONE (TargetSearch)

TargetSearch.Rcheck/TargetSearch-Ex.timings:

nameusersystemelapsed
FAMEoutliers0.110.000.16
FindPeaks0.480.023.03
ImportFameSettings0.020.000.02
ImportLibrary0.020.000.11
ImportSamples0.000.000.06
NetCDFPeakFinding0.460.031.71
Profile2.050.032.07
ProfileCleanUp1.950.031.99
RIcorrect27.11 1.4138.33
medianRILib1.210.001.21
peakFind0.570.060.65
plotFAME0.020.020.03
plotPeak0.590.030.62
plotRIdev0.880.040.94
plotSpectra0.610.040.64
quantMatrix1.920.031.95
ri2rt0.020.000.02
rt2ri000
sampleRI1.250.001.25
tsLib-class0.010.000.01
tsMSdata-class000
tsProfile-class000
tsRim-class0.080.000.08
tsSample-class0.030.000.03