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Package 440/462HostnameOS / ArchBUILDCHECKBUILD BIN
TEQC 1.1.1
Manuela Hummel
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/TEQC
Last Changed Rev: 55208 / Revision: 55359
Last Changed Date: 2011-05-03 03:06:05 -0700 (Tue, 03 May 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: TEQC
Version: 1.1.1
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings TEQC_1.1.1.tar.gz
StartedAt: 2011-05-09 14:30:08 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 14:31:53 -0700 (Mon, 09 May 2011)
EllapsedTime: 105.5 seconds
RetCode: 0
Status:  OK 
CheckDir: TEQC.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/TEQC.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-18 r55504)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TEQC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TEQC’ version ‘1.1.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘TEQC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

TEQC.Rcheck/00install.out:

* installing *source* package ‘TEQC’ ...
** R
** inst
** preparing package for lazy loading

Attaching package: ‘IRanges’

The following object(s) are masked from ‘package:base’:

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘TEQC.Rnw’ 
** testing if installed package can be loaded

* DONE (TEQC)

TEQC.Rcheck/TEQC-Ex.timings:

nameusersystemelapsed
chrom.barplot0.6160.0280.643
coverage.GC1.9440.0001.942
coverage.correlation2.8360.0082.856
coverage.density1.3640.0001.363
coverage.hist1.2760.0041.281
coverage.plot1.4040.0041.412
coverage.target1.2320.0041.266
coverage.targetlength.plot1.7040.0001.712
coverage.uniformity1.3770.0001.376
covered.k1.4760.0041.482
duplicates.barplot7.0520.0047.066
fraction.reads.target0.6720.0040.678
fraction.target0.1560.0040.157
get.baits0.0200.0000.021
get.reads0.1200.0040.125
get.targets0.1520.0000.153
insert.size.hist2.6840.0042.700
make.wigfiles1.6000.0041.605
reads2pairs2.7450.0002.802
readsPerTarget0.8040.0000.804