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Package 200/462HostnameOS / ArchBUILDCHECKBUILD BIN
GlobalAncova 3.21.0
Manuela Hummel
Snapshot Date: 2011-05-09 07:20:56 -0700 (Mon, 09 May 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GlobalAncova
Last Changed Rev: 55093 / Revision: 55359
Last Changed Date: 2011-04-27 01:26:53 -0700 (Wed, 27 Apr 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GlobalAncova
Version: 3.21.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings GlobalAncova_3.21.0.tar.gz
StartedAt: 2011-05-09 17:23:43 -0700 (Mon, 09 May 2011)
EndedAt: 2011-05-09 17:25:32 -0700 (Mon, 09 May 2011)
EllapsedTime: 108.8 seconds
RetCode: 0
Status:  OK  
CheckDir: GlobalAncova.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/GlobalAncova.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-04-17 r55484)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GlobalAncova/DESCRIPTION' ... OK
* this is package 'GlobalAncova' version '3.21.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GlobalAncova' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

GlobalAncova.Rcheck/00install.out:

* installing *source* package 'GlobalAncova' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c GlobalAncova.c -o GlobalAncova.o
GlobalAncova.c: In function 'permut_withFperm':
GlobalAncova.c:166:8: warning: 'ord_perm' may be used uninitialized in this function
GlobalAncova.c: In function 'permut':
GlobalAncova.c:268:8: warning: 'ord_perm' may be used uninitialized in this function
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c ludcmp.c -o ludcmp.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -c matrix.c -o matrix.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GlobalAncova.Rcheck/GlobalAncova/libs/x64
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GlobalAncova.rnw' 
   'GlobalAncovaDecomp.rnw' 
** testing if installed package can be loaded

* DONE (GlobalAncova)

GlobalAncova.Rcheck/GlobalAncova-Ex.timings:

nameusersystemelapsed
GlobalAncova0.910.000.94
GlobalAncova.decomp0.340.020.36
Plot.all0.090.000.09
Plot.genes0.10.00.1
Plot.sequential0.120.010.14
Plot.subjects0.100.000.09
colon.normal000
colon.pheno000
colon.tumour0.000.020.02
genesettesting000
pair.compare4.420.004.42
pathways0.010.000.01
phenodata000
vantVeer0.040.000.04