yaqcaffy 1.12.0
Laurent Gatto
| Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/yaqcaffy | | Last Changed Rev: 54800 / Revision: 59457 | | Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'yaqcaffy/DESCRIPTION' ... OK
* preparing 'yaqcaffy':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: simpleaffy
Loading required package: affy
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation("pkgname")'.
Loading required package: genefilter
Loading required package: gcrma
Warning: No BioB5 'r2' probe found. Searching for !r2 probe.
No BioB3 'r2' probe found. Searching for !r2 probe.
No BioBM 'r2' probe found. Searching for !r2 probe.
Warning: bioB5: AFFX-BioB-5_at,AFFX-BioB-5_st
More than 1 probes found:
Warning: No BioB5 'r2' probe found. Searching for !r2 probe.
No BioB3 'r2' probe found. Searching for !r2 probe.
No BioBM 'r2' probe found. Searching for !r2 probe.
Warning: bioB3: AFFX-BioB-3_at,AFFX-BioB-3_st
More than 1 probes found:
Warning: No BioB5 'r2' probe found. Searching for !r2 probe.
No BioB3 'r2' probe found. Searching for !r2 probe.
No BioBM 'r2' probe found. Searching for !r2 probe.
Warning: bioBM: AFFX-BioB-M_at,AFFX-BioB-M_st
More than 1 probes found:
Warning: No BioC5 'r2' probe found. Searching for !r2 probe.
No BioD3 'r2' probe found. Searching for !r2 probe.
Warning: bioC5: AFFX-BioC-5_at,AFFX-BioC-5_st
More than 1 probes found:
Warning: No BioC5 'r2' probe found. Searching for !r2 probe.
No BioD3 'r2' probe found. Searching for !r2 probe.
Warning: bioC3: AFFX-BioC-3_at,AFFX-BioC-3_st
More than 1 probes found:
Warning: No BioC5 'r2' probe found. Searching for !r2 probe.
No BioD3 'r2' probe found. Searching for !r2 probe.
Warning: bioD5: AFFX-BioDn-5_at,AFFX-BioDn-5_st
More than 1 probes found:
Warning: No BioC5 'r2' probe found. Searching for !r2 probe.
No BioD3 'r2' probe found. Searching for !r2 probe.
Warning: bioD3: AFFX-BioDn-3_at,AFFX-BioDn-3_st
More than 1 probes found:
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: hsac5: AFFX-HSAC07/X00351_5_at,AFFX-HSAC07/X00351_5_st
More than 1 probes found:
Warning: hsac3: AFFX-HSAC07/X00351_3_at,AFFX-HSAC07/X00351_3_st
More than 1 probes found:
Warning: hsacM: AFFX-HSAC07/X00351_M_at,AFFX-HSAC07/X00351_M_st
More than 1 probes found:
Warning: gapdh5: AFFX-HUMGAPDH/M33197_5_at,AFFX-HUMGAPDH/M33197_5_st
More than 1 probes found:
Warning: gapdh3: AFFX-HUMGAPDH/M33197_3_at,AFFX-HUMGAPDH/M33197_3_st
More than 1 probes found:
Warning: gapdhM: AFFX-HUMGAPDH/M33197_M_at,AFFX-HUMGAPDH/M33197_M_st
More than 1 probes found:
Warning: No BioB5 'r2' probe found. Searching for !r2 probe.
No BioB3 'r2' probe found. Searching for !r2 probe.
No BioBM 'r2' probe found. Searching for !r2 probe.
Warning: bioB5: AFFX-BioB-5_at,AFFX-BioB-5_st
More than 1 probes found:
Warning: No BioB5 'r2' probe found. Searching for !r2 probe.
No BioB3 'r2' probe found. Searching for !r2 probe.
No BioBM 'r2' probe found. Searching for !r2 probe.
Warning: bioB3: AFFX-BioB-3_at,AFFX-BioB-3_st
More than 1 probes found:
Warning: No BioB5 'r2' probe found. Searching for !r2 probe.
No BioB3 'r2' probe found. Searching for !r2 probe.
No BioBM 'r2' probe found. Searching for !r2 probe.
Warning: bioBM: AFFX-BioB-M_at,AFFX-BioB-M_st
More than 1 probes found:
Warning: No BioC5 'r2' probe found. Searching for !r2 probe.
No BioD3 'r2' probe found. Searching for !r2 probe.
Warning: bioC5: AFFX-BioC-5_at,AFFX-BioC-5_st
More than 1 probes found:
Warning: No BioC5 'r2' probe found. Searching for !r2 probe.
No BioD3 'r2' probe found. Searching for !r2 probe.
Warning: bioC3: AFFX-BioC-3_at,AFFX-BioC-3_st
More than 1 probes found:
Warning: No BioC5 'r2' probe found. Searching for !r2 probe.
No BioD3 'r2' probe found. Searching for !r2 probe.
Warning: bioD5: AFFX-BioDn-5_at,AFFX-BioDn-5_st
More than 1 probes found:
Warning: No BioC5 'r2' probe found. Searching for !r2 probe.
No BioD3 'r2' probe found. Searching for !r2 probe.
Warning: bioD3: AFFX-BioDn-3_at,AFFX-BioDn-3_st
More than 1 probes found:
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: No dap5 'r2' probe found. Searching for !r2 probe.
No thr3 'r2' probe found. Searching for !r2 probe.
No lysM 'r2' probe found. Searching for !r2 probe.
No phe5 'r2' probe found. Searching for !r2 probe.
Warning: hsac5: AFFX-HSAC07/X00351_5_at,AFFX-HSAC07/X00351_5_st
More than 1 probes found:
Warning: hsac3: AFFX-HSAC07/X00351_3_at,AFFX-HSAC07/X00351_3_st
More than 1 probes found:
Warning: hsacM: AFFX-HSAC07/X00351_M_at,AFFX-HSAC07/X00351_M_st
More than 1 probes found:
Warning: gapdh5: AFFX-HUMGAPDH/M33197_5_at,AFFX-HUMGAPDH/M33197_5_st
More than 1 probes found:
Warning: gapdh3: AFFX-HUMGAPDH/M33197_3_at,AFFX-HUMGAPDH/M33197_3_st
More than 1 probes found:
Warning: gapdhM: AFFX-HUMGAPDH/M33197_M_at,AFFX-HUMGAPDH/M33197_M_st
More than 1 probes found:
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
pdflatex yaqcaffy.tex
This is pdfTeX, Version 3.1415926-1.40.11 (MiKTeX 2.9)
entering extended mode
(D:\biocbld\bbs-2.8-bioc\tmpdir\RtmpeLJnCM\Rbuild2dec59d1\yaqcaffy\inst\doc\yaq
caffy.tex
LaTeX2e <2009/09/24>
Babel <v3.8l> and hyphenation patterns for english, afrikaans, ancientgreek, ar
abic, armenian, assamese, basque, bengali, bokmal, bulgarian, catalan, coptic,
croatian, czech, danish, dutch, esperanto, estonian, farsi, finnish, french, ga
lician, german, german-x-2009-06-19, greek, gujarati, hindi, hungarian, iceland
ic, indonesian, interlingua, irish, italian, kannada, kurmanji, lao, latin, lat
vian, lithuanian, malayalam, marathi, mongolian, mongolianlmc, monogreek, ngerm
an, ngerman-x-2009-06-19, nynorsk, oriya, panjabi, pinyin, polish, portuguese,
romanian, russian, sanskrit, serbian, slovak, slovenian, spanish, swedish, swis
sgerman, tamil, telugu, turkish, turkmen, ukenglish, ukrainian, uppersorbian, u
senglishmax, welsh, loaded.
pdflatex.exe: Windows API error 5: Access is denied.
pdflatex.exe: Data: cprogramdatamiktex2.9miktexdatale1756f6ade37d5f870f23c05a7f81e257.fndb
make: *** [vignette] Error 1
Error in tools::buildVignettes(dir = ".") : running 'make' failed
Execution halted