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Package 340/467HostnameOS / ArchBUILDCHECKBUILD BIN
pint 1.4.04
Olli-Pekka Huovilainen
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/pint
Last Changed Rev: 55375 / Revision: 59457
Last Changed Date: 2011-05-09 14:58:29 -0700 (Mon, 09 May 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: pint
Version: 1.4.04
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch pint_1.4.04.tar.gz
StartedAt: 2011-10-20 15:55:24 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 16:00:59 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 335.3 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: pint.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/pint.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pint/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pint' version '1.4.04'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pint' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   depsearch.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/pint.Rcheck/00check.log'
for details

pint.Rcheck/00install.out:

* installing *source* package 'pint' ...
** R
** data
** inst
** preparing package for lazy loading

dmt Copyright (C) 2008-2011 Leo Lahti and Olli-Pekka Huovilainen.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under FreeBSD, see the licensing terms for details.

Creating a new generic function for "as.data.frame" in "pint"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

dmt Copyright (C) 2008-2011 Leo Lahti and Olli-Pekka Huovilainen.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under FreeBSD, see the licensing terms for details.


pint Copyright (C) 2008-2011 Olli-Pekka Huovilainen and Leo Lahti.

This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it
under the FreeBSD license.
See the licensing terms for details.

* DONE (pint)

pint.Rcheck/pint-Ex.timings:

nameusersystemelapsed
ChromosomeModels-class99.29 0.0199.41
GeneDependencyModel-class26.82 0.0026.81
fit.byname0.200.000.21
pint.data0.190.000.18
plot26.79 0.0226.82
screen110.04 0.00110.09
window0.310.000.31
z.effect0.170.000.17