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Package 92/467HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.2.0
Stephen Nyangoma
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/clippda
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: clippda
Version: 1.2.0
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch clippda_1.2.0.tar.gz
StartedAt: 2011-10-20 13:47:26 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 13:54:03 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 397.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: clippda.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/clippda.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clippda/DESCRIPTION' ... OK
* this is package 'clippda' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'clippda' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely inst/CITATION should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   clippda.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/clippda.Rcheck/00check.log'
for details

clippda.Rcheck/00install.out:

* installing *source* package 'clippda' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
aclinicalProteomicsData-class0.140.000.14
aclinicalProteomicsData-methods0.550.060.61
betweensampleVariance5.920.005.93
checkNo.replicates0.310.000.31
clippda-package152.57 0.44153.33
fisherInformation0.150.000.15
liverRawData0.020.000.02
liver_pheno000
liverdata5.730.035.78
mostSimilarTwo0.020.000.02
negativeIntensitiesCorrection2.010.002.01
phenoDataFrame0.110.000.11
pheno_urine000
preProcRepeatedPeakData5.020.005.05
proteomicsExprsData0.520.000.51
proteomicspData0.100.000.11
replicateCorrelations8.320.008.33
sampleClusteredData2.120.002.14
sampleSize96.80 0.1096.97
sampleSize3DscatterPlots0.110.000.11
sampleSizeContourPlots0.050.000.05
sampleSizeParameters46.75 0.0446.86
sample_technicalVariance11.92 0.0211.95
spectrumFilter505