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Package 391/467HostnameOS / ArchBUILDCHECKBUILD BIN
RPA 1.8.01
Leo Lahti
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/RPA
Last Changed Rev: 56421 / Revision: 59457
Last Changed Date: 2011-06-27 04:15:55 -0700 (Mon, 27 Jun 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: RPA
Version: 1.8.01
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch RPA_1.8.01.tar.gz
StartedAt: 2011-10-20 16:24:04 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 16:26:58 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 173.9 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: RPA.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/RPA.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RPA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RPA' version '1.8.01'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RPA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'rpa.fit.test.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   RPA.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/RPA.Rcheck/00check.log'
for details

RPA.Rcheck/00install.out:

* installing *source* package 'RPA' ...
** R
** inst
** preparing package for lazy loading
     Package    LibPath                             Item      
[1,] "affydata" "D:/biocbld/bbs-2.8-bioc/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
     Package    LibPath                             Item      
[1,] "affydata" "D:/biocbld/bbs-2.8-bioc/R/library" "Dilution"
     Title                        
[1,] "AffyBatch instance Dilution"

RPA Copyright (C) 2008-2011 Leo Lahti.

This program comes with ABSOLUTELY NO WARRANTY.

This is free software, and you are welcome to redistribute it under the FreeBSD open source license, see the licensing terms for details.

* DONE (RPA)

RPA.Rcheck/RPA-Ex.timings:

nameusersystemelapsed
RPA-package000
RPA.iteration000
RPA.pointestimate000
estimate.affinities000
get.probe.noise.estimates10.07 0.3610.46
plot000
rpa-class000
rpa000
rpa.fit-class000
rpa.fit000
rpa.list-class000
rpa.plot000
rpa.priors-class000
rpa2eset000
set.priors105.03 21.67126.86