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Package 386/467HostnameOS / ArchBUILDCHECKBUILD BIN
RNAinteract 1.0.0
Bernd Fischer
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/RNAinteract
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: RNAinteract
Version: 1.0.0
Command: chmod a+r RNAinteract -R && D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RNAinteract
StartedAt: 2011-10-20 12:29:18 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 12:30:33 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 75.1 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'RNAinteract/DESCRIPTION' ... OK
* preparing 'RNAinteract':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: abind
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading Tcl/Tk interface ... done
It looks like 96-well plates are used. nrow=8 ncol=12
If this is not correct, specify the pdim argument and re-run.
RNA interaction screen
Nr of template reagents:     96
Nr of query reagents:        12
Nr of experiments in screen: 576
Nr of channels:              3
Nr of screens:               2
Warning: Zero sample variances detected, have been offset
Warning: Zero sample variances detected, have been offset
Warning: Zero sample variances detected, have been offset
Warning: Zero sample variances detected, have been offset
Warning: Zero sample variances detected, have been offset
Warning: Zero sample variances detected, have been offset
Warning: Zero sample variances detected, have been offset
Warning: Zero sample variances detected, have been offset
Warning: Zero sample variances detected, have been offset
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
texi2dvi --pdf RNAinteract.tex
texi2dvi.exe: Windows API error 5: Access is denied.
texi2dvi.exe: Data: cprogramdatamiktex2.9miktexdataleb1cfc6be702f63eea92ca0fbc9559e5c.fndb
make: *** [RNAinteract] Error 1
Error in tools::buildVignettes(dir = ".") : running 'make' failed
Execution halted