Package: MSnbase

Version: 1.0.7

Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch MSnbase_1.0.7.tar.gz

StartedAt: 2011-10-20 16:03:14 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 16:06:28 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 194.1 seconds

RetCode: 0

Status:  OK

CheckDir: MSnbase.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/MSnbase.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MSnbase/DESCRIPTION' ... OK
* this is package 'MSnbase' version '1.0.7'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MSnbase' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'MSnbase' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "MSnbase"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MSnbase)

name	user	system	elapsed
MSnExp-class	1.35	0.00	1.37
MSnProcess-class	0	0	0
MSnSet-class	4.62	0.00	4.69
NAnnotatedDataFrame-class	0.02	0.00	0.01
ReporterIons-class	0.01	0.00	0.02
TMT6	0.02	0.00	0.01
clean-methods	6.91	0.03	6.99
extractPrecSpectra-methods	1.07	0.02	1.09
extractSpectra-methods	1.05	0.01	1.06
formatRt	0	0	0
iTRAQ4	0.03	0.00	0.03
pSet-class	0	0	0
plot-methods	9.99	0.00	10.16
plot2d-methods	3.02	0.00	3.11
quantify-methods	4.65	0.00	4.69
readIspyData	0	0	0
readMzXMLData	1.02	0.02	1.03
removePeaks-methods	6.98	0.01	7.00
trimMz-methods	1.14	0.00	1.14