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Package 223/467HostnameOS / ArchBUILDCHECKBUILD BIN
HTqPCR 1.6.0
Heidi Dvinge
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/HTqPCR
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64 [ ERROR ] skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: HTqPCR
Version: 1.6.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HTqPCR
StartedAt: 2011-10-20 10:36:41 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 10:37:03 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 22.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* preparing ‘HTqPCR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: limma
Warning in arrows(...) :
  zero-length arrow is of indeterminate angle and so skipped
Warning in arrows(...) :
  zero-length arrow is of indeterminate angle and so skipped
Replicates differing > 20% on card 2:
             rep1     rep2
Gene135 40.000000 29.90044
Gene14  40.000000 27.69185
Gene37   7.408248 40.00000
Gene73  40.000000 23.11949
Gene84  21.673946 40.00000
Gene86  20.389658 40.00000
Gene9   22.494440 31.39404
Gene95  15.916160 40.00000
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 1 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 2 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 3 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 4 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 5 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 6 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 1 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 2 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 3 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 4 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 5 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 6 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 1 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 2 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 3 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 4 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 5 is not drawn
Warning in bplt(at[i], wid = width[i], stats = z$stats[, i], out = z$out[z$group ==  :
  Outlier (-Inf) in boxplot 6 is not drawn

Error: processing vignette 'HTqPCR.Rnw' failed with diagnostics:
 chunk 29 (label = Normalise data) 
Error in smooth.spline(ref[i.set], data[i.set]) : 
  missing or infinite values in inputs are not allowed
Execution halted