CoGAPS 1.2.1
Elana J. Fertig , Michael F. Ochs
| Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/CoGAPS | | Last Changed Rev: 57837 / Revision: 59457 | | Last Changed Date: 2011-09-06 07:03:05 -0700 (Tue, 06 Sep 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | [ ERROR ] | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | N O T S U P P O R T E D |
* checking for file ‘CoGAPS/DESCRIPTION’ ... OK
* preparing ‘CoGAPS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running cleanup
* checking whether ‘INDEX’ is up-to-date ... NO
* use '--force' to remove the existing ‘INDEX’
* installing the package to re-build vignettes
-----------------------------------
* installing *source* package ‘CoGAPS’ ...
checking for prefix by checking for jags... /usr/local/bin/jags
checking for g++... g++
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking Console.h usability... yes
checking Console.h presence... yes
checking for Console.h... yes
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for jags_version in -ljags... yes
configure: creating ./config.status
config.status: creating src/Makevars
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating R/unix/zzz.R
** libs
g++ -I/home/biocbuild/bbs-2.8-bioc/R/include -I/usr/local/include/GAPS-JAGS -I/usr/local/include -fpic -g -O2 -c jags.cc -o jags.o
jags.cc: In function ‘SEXPREC* adapt_off(SEXPREC*)’:
jags.cc:436:26: error: no matching function for call to ‘Console::adaptOff(bool&)’
/usr/local/include/GAPS-JAGS/Console.h:195:8: note: candidate is: bool Console::adaptOff()
make: *** [jags.o] Error 1
ERROR: compilation failed for package ‘CoGAPS’
* removing ‘/tmp/RtmpYKUkJZ/Rinst3b709c2b/CoGAPS’
-----------------------------------
ERROR: package installation failed