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Package 70/467HostnameOS / ArchBUILDCHECKBUILD BIN
BufferedMatrix 1.16.0
Benjamin Milo Bolstad
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/BufferedMatrix
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: BufferedMatrix
Version: 1.16.0
Command: rm -rf BufferedMatrix.buildbin-libdir && mkdir BufferedMatrix.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrix_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R BufferedMatrix.buildbin-libdir
StartedAt: 2011-10-20 18:05:43 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 18:05:57 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 13.5 seconds
RetCode: 0
Status:  OK 
PackageFile: BufferedMatrix_1.16.0.tgz
PackageFileSize: 647 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=BufferedMatrix.buildbin-libdir BufferedMatrix_1.16.0.tar.gz'
>>>>>>> 

* installing *source* package 'BufferedMatrix' ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c RBufferedMatrix.c -o RBufferedMatrix.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:3327: warning: 'sort_double' defined but not used
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c init_package.c -o init_package.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrix.so RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/i386
*** arch - ppc
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c RBufferedMatrix.c -o RBufferedMatrix.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:3327: warning: 'sort_double' defined but not used
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c init_package.c -o init_package.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrix.so RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/ppc
*** arch - x86_64
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c RBufferedMatrix.c -o RBufferedMatrix.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:3327: warning: 'sort_double' defined but not used
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c init_package.c -o init_package.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrix.so RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/x86_64
** R
** inst
** preparing package for lazy loading
Creating a generic for 'rowMeans' in package 'BufferedMatrix'
    (the supplied definition differs from and overrides the implicit generic
    in package 'base': Formal arguments differ (in default values?))
Creating a generic for 'rowSums' in package 'BufferedMatrix'
    (the supplied definition differs from and overrides the implicit generic
    in package 'base': Formal arguments differ (in default values?))
Creating a generic for 'colMeans' in package 'BufferedMatrix'
    (the supplied definition differs from and overrides the implicit generic
    in package 'base': Formal arguments differ (in default values?))
Creating a generic for 'colSums' in package 'BufferedMatrix'
    (the supplied definition differs from and overrides the implicit generic
    in package 'base': Formal arguments differ (in default values?))
Creating a new generic function for "ncol" in "BufferedMatrix"
Creating a new generic function for "nrow" in "BufferedMatrix"
Creating a new generic function for "mean" in "BufferedMatrix"
Creating a new generic function for "as.matrix" in "BufferedMatrix"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BufferedMatrix)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/i386/BufferedMatrix.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/i386/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/i386/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/i386/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/i386/BufferedMatrix.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/ppc/BufferedMatrix.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/ppc/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/ppc/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/ppc/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/ppc/BufferedMatrix.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/x86_64/BufferedMatrix.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/x86_64/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/x86_64/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/x86_64/BufferedMatrix.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "BufferedMatrix.buildbin-libdir/BufferedMatrix/libs/x86_64/BufferedMatrix.so"