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Package 386/436HostnameOS / ArchBUILDCHECKBUILD BIN
simpleaffy 2.27.1
Crispin Miller
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/simpleaffy
Last Changed Rev: 51178 / Revision: 53255
Last Changed Date: 2010-12-02 05:08:20 -0800 (Thu, 02 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: simpleaffy
Version: 2.27.1
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings simpleaffy_2.27.1.tar.gz
StartedAt: 2011-02-24 22:47:59 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 22:49:47 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 107.1 seconds
RetCode: 0
Status:  OK 
CheckDir: simpleaffy.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/simpleaffy.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘simpleaffy/DESCRIPTION’ ... OK
* this is package ‘simpleaffy’ version ‘2.27.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘simpleaffy’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

simpleaffy.Rcheck/00install.out:

* installing *source* package ‘simpleaffy’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.8-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c simpleaffy.c -o simpleaffy.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o simpleaffy.so simpleaffy.o -L/home/biocbuild/bbs-2.8-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.8-bioc/meat/simpleaffy.Rcheck/simpleaffy/libs
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (simpleaffy)

simpleaffy.Rcheck/simpleaffy-Ex.timings:

nameusersystemelapsed
all.present000
all.present.in.group000
bg.correct.sa000
call.exprs000
detection.p.val000
get.annotation0.0000.0000.001
get.array.indices0.0000.0000.001
get.array.subset000
get.array.subset.affy000
get.fold.change.and.t.test000
hmap.colors000
hmap.eset000
hmap.pc000
journalpng000
justMAS000
pairwise.comparison0.0000.0000.001
pairwise.filter0.0000.0000.001
plot.pairwise.comparison000
plot.qc.stats0.0640.0040.068
qc0.0520.0040.056
qc.affy0.2440.0000.244
qc.get.alpha10.0040.0000.004
qc.get.array000
qc.get.probes0.0000.0040.004
qc.get.ratios0.0040.0000.004
qc.get.spikes0.0000.0000.001
qc.have.params0.0120.0040.014
qc.ok0.0000.0040.003
qc.read.file0.0000.0040.004
qc.stats0.0480.0000.045
read.affy000
read.affy.mixed000
setQCEnvironment0.0120.0000.010
simpleaffy-deprecated0.0200.0000.018
standard.pearson000
trad.scatter.plot000