Package: plateCore

Version: 1.9.0

Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings plateCore_1.9.0.tar.gz

StartedAt: 2011-02-24 19:21:55 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 19:25:02 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 186.5 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/plateCore.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.9.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	3.69	0.02	3.70
applyControlGates-methods	14.35	0.00	14.36
compensate-methods	5.29	0.00	5.33
compensationSet	0.30	0.00	0.29
densityplot-methods	1.66	0.00	1.66
fixAutoFl-methods	5.78	0.00	5.81
flowPlate-class	3.26	0.00	3.30
flowPlate-method	3.3	0.0	3.3
fpbind-methods	7.25	0.00	7.25
getGroups-methods	1.44	0.00	1.44
gutterPlot-methods	1.41	0.00	1.41
mfiPlot-methods	14.33	0.00	14.48
on-methods	9.29	0.03	9.38
panel.densityplot.flowPlate	1.86	0.02	1.87
panel.xyplot.flowPlate	1.52	0.00	1.52
plateCore-package	3.29	0.01	3.33
plateSet-methods	3.43	0.00	3.45
plotPlate-methods	3.71	0.00	3.71
prepanel.densityplot.flowPlate	1.70	0.00	1.71
prepanel.xyplot.flowPlate	1.55	0.00	1.54
setControlGates-methods	3.63	0.00	3.69
summaryStats-methods	14.89	0.02	14.92
wellAnnotation-methods	1.37	0.00	1.38
xyplot-methods	1.66	0.00	1.67