Package: phenoDist

Version: 0.99.1

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings phenoDist_0.99.1.tar.gz

StartedAt: 2011-02-24 21:50:42 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 21:54:07 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 205.9 seconds

RetCode: 0

Status:  OK

CheckDir: phenoDist.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/phenoDist.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘phenoDist/DESCRIPTION’ ... OK
* this is package ‘phenoDist’ version ‘0.99.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘phenoDist’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘phenoDist’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: EBImage
Loading required package: abind
Xlib:  extension "RANDR" missing on display ":15757.0".
Loading required package: cellHTS2
Loading required package: RColorBrewer
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'Biobase'

The following object(s) are masked from 'package:EBImage':

    channel, combine

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Loading required package: grid
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Loading required package: class
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (phenoDist)

name	user	system	elapsed
PDMByFactorAnalysis	3.584	0.084	21.412
PDMByKS	9.097	0.216	44.510
PDMBySvmAccuracy	10.076	0.020	10.144
PDMBySvmWeightVector	18.869	0.024	18.974
PDMByWellAvg	1.601	0.008	3.639
clusterDist	0.500	0.024	0.525
ctlSeparatn	0	0	0
distToNeg	9.768	0.016	9.801
enrichAnalysis	0.004	0.000	0.000
repCorr	0	0	0
repDistRank	0	0	0