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Package 140/436HostnameOS / ArchBUILDCHECKBUILD BIN
flowQ 1.11.0
F. Hahne
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowQ
Last Changed Rev: 52939 / Revision: 53255
Last Changed Date: 2011-02-17 04:30:01 -0800 (Thu, 17 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ WARNINGS ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: flowQ
Version: 1.11.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings flowQ_1.11.0.tar.gz
StartedAt: 2011-02-24 19:28:53 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 19:31:41 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 167.9 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: flowQ.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/flowQ.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowQ/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowQ’ version ‘1.11.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘flowQ’ can be installed ... WARNING
Found the following significant warnings:
  Warning: running command 'convert -list configure 2>/dev/null' had status 1
See ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/flowQ.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
evaluateProcess: multiple local function definitions for ‘efun’ with
  different formal arguments
normalizeSets : <anonymous>: no visible global function definition for
  ‘warpSet’
qaProcess.2DStatsPlot: no visible binding for global variable ‘Aliquot’
qaProcess.DensityPlot: no visible binding for global variable ‘Aliquot’
qaProcess.ECDFPlot: no visible binding for global variable ‘Aliquot’
* checking Rd files ... NOTE
prepare_Rd: normalizeSets.Rd:44-51: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/flowQ.Rcheck/00check.log’
for details

flowQ.Rcheck/00install.out:

* installing *source* package ‘flowQ’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: flowCore
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: KernSmooth
Loading required package: tools

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Warning: running command 'convert -list configure 2>/dev/null' had status 1
Using ImageMagic library at /usr/lib64/ImageMagick-6.5.4
(version 6.5.4)

* DONE (flowQ)

flowQ.Rcheck/flowQ-Ex.timings:

nameusersystemelapsed
aggregatorList-class0.0080.0000.009
binaryAggregator-class0.0000.0000.001
discreteAggregator-class0.0000.0000.001
evaluateProcess0.0000.0040.000
factorAggregator-class0.0000.0000.001
flowQ-package000
numericAggregator-class0.0000.0000.001
outlier-class000
outlierResult-class0.0000.0000.001
qaAggregator-class0.0000.0000.001
qaGraph-class000
qaGraphList-class0.0000.0000.001
qaProcess-class000
qaProcess.2DStatsPlot20.744 1.24016.037
qaProcess.BoundaryPlot9.2050.8727.619
qaProcess.DensityPlot14.053 0.86012.095
qaProcess.ECDFPlot14.777 0.88012.865
qaProcess.KLDistPlot11.749 0.83210.010
qaProcess.cellnumber000
qaProcess.marginevents000
qaProcess.timeflow000
qaProcess.timeline000
qaProcessFrame-class0.0000.0000.001
qaReport0.0000.0000.001
rangeAggregator-class0.0000.0000.001
stringAggregator-class0.0000.0040.001
txtFormatQAObject10.145 0.948 7.312
writeQAReport000
writeQATextReport0.0000.0000.001