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Package 390/436HostnameOS / ArchBUILDCHECKBUILD BIN
SLGI 1.11.0
Nolwenn Le Meur
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/SLGI
Last Changed Rev: 52673 / Revision: 53255
Last Changed Date: 2011-02-14 09:57:54 -0800 (Mon, 14 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: SLGI
Version: 1.11.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings SLGI_1.11.0.tar.gz
StartedAt: 2011-02-24 19:54:54 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 20:02:57 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 483.1 seconds
RetCode: 0
Status:  OK  
CheckDir: SLGI.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/SLGI.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SLGI/DESCRIPTION' ... OK
* this is package 'SLGI' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SLGI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: YEAST
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

SLGI.Rcheck/00install.out:

* installing *source* package 'SLGI' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: RpsiXML
Loading required package: annotate
Loading required package: graph
Loading required package: RBGL
Loading required package: XML

Attaching package: 'XML'

The following object(s) are masked from 'package:graph':

    addNode

Loading required package: hypergraph

Attaching package: 'hypergraph'

The following object(s) are masked from 'package:AnnotationDbi':

    head, tail

The following object(s) are masked from 'package:utils':

    head, tail

Loading required package: apComplex
Creating a new generic function for "plot" in "SLGI"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (SLGI)

SLGI.Rcheck/SLGI-Ex.timings:

nameusersystemelapsed
Atong0.030.000.03
AtongFnDomain8.190.028.31
AtongPair0.980.011.02
SDL0.020.000.01
SGA0.010.000.02
SGD.SL0.140.000.14
TFmat0.20.00.2
byComplex1.210.001.21
comemberIn1.190.001.25
compare36.43 1.3938.00
congruence000
createSquareMatrix0.350.000.34
domainDist3.290.023.33
essglist0.020.000.01
getFASTAname5.670.035.74
getInteraction0.020.000.01
getSharedDomains0.150.020.22
getSharedInteraction000
getTestedPairs0.020.000.02
getUniquePairs0.030.000.03
gi20050.080.000.08
gi20070.220.000.22
gi2Interactome000
hyperG000
iSummary42.07 3.1845.91
modelSLGI43.49 0.4744.23
normInteraction19.41 5.3824.95
plot45.42 3.5149.46
seqMatcherAlign000
sharedBy5.040.005.04
sharedInt000
siResult-class47.06 4.0251.48
test2Interact000
topInteraction25.16 3.1528.52
twoWayTable12.37 0.0412.53
withinComplex1.570.011.58