Package: Rmagpie

Version: 1.7.0

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings Rmagpie_1.7.0.tar.gz

StartedAt: 2011-02-24 22:23:47 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 22:25:17 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 90.0 seconds

RetCode: 0

Status:  OK

CheckDir: Rmagpie.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/Rmagpie.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rmagpie/DESCRIPTION’ ... OK
* this is package ‘Rmagpie’ version ‘1.7.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘Rmagpie’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getFeatureSelectionOptions<-,assessment: no visible global function
  definition for ‘getNoOfOptions<-’
getFeatureSelectionOptions<-,assessment: no visible global function
  definition for ‘getNoModels<-’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘Rmagpie’ ...
** R
** data
** demo
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Rmagpie)

name	user	system	elapsed
classifyNewSamples-methods	2.556	0.016	2.615
experiment-class	0.180	0.004	0.186
finalClassifier-class	0.096	0.008	0.104
findFinalClassifier-methods	0.208	0.004	0.214
geneSubsets-class	0.012	0.000	0.012
getDataset-methods	0.012	0.004	0.017
getFeatureSelectionOptions-methods	0.012	0.000	0.013
getFinalClassifier	0.244	0.068	0.365
getResults-methods	7.764	0.028	7.825
plotErrorsFoldTwoLayerCV-methods	7.365	0.004	7.375
plotErrorsRepeatedOneLayerCV	1.344	0.004	1.346
plotErrorsSummaryOneLayerCV-methods	1.364	0.000	1.365
rankedGenesImg-methods	0.000	0.000	0.001
runOneLayerExtCV-methods	1.196	0.004	1.201
runTwoLayerExtCV-methods	13.653	0.000	13.653
setDataset-methods	0	0	0
setFeatureSelectionOptions-methods	0.016	0.000	0.017
thresholds-class	0.000	0.000	0.002
vV70genes	0.012	0.000	0.011