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Package 314/436HostnameOS / ArchBUILDCHECKBUILD BIN
PICS 1.5.0
Arnaud Droit , Xuekui Zhang , Raphael Gottardo
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/PICS
Last Changed Rev: 50725 / Revision: 53255
Last Changed Date: 2010-11-06 14:29:12 -0700 (Sat, 06 Nov 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK [ OK ]
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: PICS
Version: 1.5.0
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD INSTALL --build --library=PICS.buildbin-libdir PICS_1.5.0.tar.gz
StartedAt: 2011-02-24 22:39:25 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 22:39:38 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 13.2 seconds
RetCode: 0
Status:  OK  
PackageFile: PICS_1.5.0.zip
PackageFileSize: 946.3 KiB

Command output

* installing *source* package 'PICS' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include         -O2 -Wall  -std=gnu99 -c background.c -o background.o
background.c: In function 'background':
background.c:44:9: warning: statement with no effect
background.c:97:9: warning: statement with no effect
background.c:12:10: warning: unused variable 'length'
background.c:10:26: warning: unused variable 'countR'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include         -O2 -Wall  -std=gnu99 -c pics.c -o pics.o
pics.c: In function 'iterEM':
pics.c:581:25: warning: unused variable 'mu'
pics.c: In function 'ECM1':
pics.c:804:3: warning: suggest parentheses around comparison in operand of '&'
pics.c:964:3: warning: suggest parentheses around comparison in operand of '&'
pics.c:652:15: warning: unused variable 'k'
pics.c: In function 'ECM2':
pics.c:1010:66: warning: unused variable 'ee'
pics.c:1010:57: warning: unused variable 'ggR'
pics.c:1010:52: warning: unused variable 'ggF'
pics.c:1010:47: warning: unused variable 'aaR'
pics.c:1010:42: warning: unused variable 'aaF'
pics.c:1010:29: warning: unused variable 'etaDiff'
pics.c:1001:15: warning: unused variable 'k'
pics.c: In function 'BIC':
pics.c:1273:96: warning: unused variable 'k'
pics.c: In function 'getInfMat':
pics.c:1634:76: warning: unused variable 'PhiRw'
pics.c:1634:69: warning: unused variable 'PhiFw'
pics.c: In function 'mergePeak':
pics.c:1890:11: warning: unused variable 'j'
pics.c:1890:7: warning: unused variable 'i'
pics.c: In function 'BIC':
pics.c:1276:35: warning: 'penalty' may be used uninitialized in this function
pics.c: In function 'fitModelK':
pics.c:421:7: warning: 'ans' may be used uninitialized in this function
pics.c:421:18: warning: 'firstFit' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include         -O2 -Wall  -std=gnu99 -c segment.c -o segment.o
segment.c: In function 'segReads':
segment.c:106:3: warning: suggest parentheses around comparison in operand of '&'
segment.c:97:45: warning: unused variable 'count'
segment.c: In function 'callRegions':
segment.c:248:7: warning: unused variable 'i'
segment.c: In function 'getSegL':
segment.c:1284:11: warning: unused variable 'j'
segment.c: In function 'getDensity':
segment.c:1461:9: warning: suggest parentheses around comparison in operand of '&'
segment.c:1462:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1463:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1464:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1465:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1466:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1467:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1409:8: warning: unused variable 'filter1'
segment.c:1408:11: warning: unused variable 'muFilter'
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o PICS.dll tmp.def background.o pics.o segment.o -lws2_32 -LC:/Rtools212/GSL64/lib -lgsl -lgslcblas -lm -LD:/biocbld/bbs-2.8-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/PICS.buildbin-libdir/PICS/libs/x64
** R
** inst
** preparing package for lazy loading

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: Biostrings
in method for 'as.list' with signature '"AlignedRead"': no definition for class "AlignedRead"
in method for 'coerce' with signature '"AlignedRead","GenomeData"': no definition for class "AlignedRead"
Creating a new generic function for "density" in "PICS"
Creating a new generic function for "plot" in "PICS"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PICS' as PICS_1.5.0.zip

* DONE (PICS)