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Package 77/436HostnameOS / ArchBUILDCHECKBUILD BIN
ChemmineR 2.1.6
ChemmineR Team
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ChemmineR
Last Changed Rev: 53052 / Revision: 53255
Last Changed Date: 2011-02-22 07:07:14 -0800 (Tue, 22 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: ChemmineR
Version: 2.1.6
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings ChemmineR_2.1.6.tar.gz
StartedAt: 2011-02-24 19:06:38 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 19:10:15 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 217.6 seconds
RetCode: 0
Status:  OK  
CheckDir: ChemmineR.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/ChemmineR.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ChemmineR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ChemmineR' version '2.1.6'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ChemmineR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.data.frame.to.str: no visible binding for global variable 'string'
.gen_atom_pair: no visible global function definition for
  'Descriptors_get_len'
.gen_atom_pair: no visible global function definition for
  'Descriptors_get_descriptor'
.parse: no visible global function definition for 'Descriptors'
.parse: no visible global function definition for
  'Descriptors_parse_sdf'
cmp.parse: no visible global function definition for 'batch_parse'
cmp.parse1: no visible global function definition for
  'delete_Descriptors'
datablock2ma: no visible binding for global variable 'sdfset'
sdf_to_desc: no visible global function definition for
  'delete_Descriptors'
sdfs_to_desc: no visible global function definition for 'batch_parse'
validSDF: no visible binding for global variable 'sdfset'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

ChemmineR.Rcheck/00install.out:

* installing *source* package 'ChemmineR' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "ChemmineR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ChemmineR)

ChemmineR.Rcheck/ChemmineR-Ex.timings:

nameusersystemelapsed
AP-class17.89 0.0317.92
APset-class17.55 0.0117.56
SDF-class0.10.00.1
SDF2apcmp0.030.000.03
SDFset-class0.940.000.94
SDFset2SDF0.230.000.24
SDFset2list0.110.020.12
SDFstr-class0.520.000.52
ap17.09 0.0017.09
apset2descdb17.58 0.0017.59
atomblock0.410.020.42
atomcount0.430.000.44
atomprop0.020.000.02
bondblock0.310.000.31
cid2.050.002.04
cluster.sizestat5.860.036.85
cluster.visualize6.200.007.31
cmp.cluster8.460.029.27
cmp.duplicated5.210.006.06
cmp.parse5.220.016.05
cmp.parse1000
cmp.search6.300.027.21
cmp.similarity5.020.005.96
datablock0.710.000.72
datablock2ma0.050.010.06
db.explain5.160.006.17
db.subset5.040.006.14
grepSDFset0.10.00.1
header0.290.000.29
makeUnique0.10.00.1
plotStruc0.340.000.34
read.SDFset1.030.001.03
read.SDFstr1.600.001.59
sdf.subset5.310.026.49
sdf.visualize 5.17 0.0310.34
sdf2ap17.49 0.0317.52
sdf2list0.030.020.05
sdf2str0.040.000.04
sdfid0.110.000.11
sdfsample0.080.010.10
sdfstr2list1.350.101.45
validSDF0.120.000.12
view3.580.003.58
write.SDF0.420.000.42